Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:41803968-43235800

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bod1l 5 41787538 to 41844315 56777 - protein coding gene biorientation of chromosomes in cell division 1-like
Tssr50848 5 41807195 to 41807227 32 - TSS region transcription start site region 50848
Tssr50849 5 41810079 to 41810105 26 - TSS region transcription start site region 50849
Tssr50850 5 41819007 to 41819024 17 - TSS region transcription start site region 50850
Tssr50851 5 41819383 to 41819391 8 - TSS region transcription start site region 50851
Tssr50852 5 41821438 to 41821461 23 - TSS region transcription start site region 50852
Tssr50853 5 41828837 to 41828850 13 - TSS region transcription start site region 50853
Tssr50854 5 41832565 to 41832587 22 - TSS region transcription start site region 50854
Cpgi15829 5 41843670 to 41844607 937 CpG island CpG island 15829
Tssr50855 5 41844232 to 41844329 97 - TSS region transcription start site region 50855
Gm5298 5 41853310 to 41854201 891 - pseudogene predicted gene 5298
D5Dcr56 5 41878493 to 41878601 108 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 56
Mir6414 5 41891342 to 41891423 81 + miRNA gene microRNA 6414
Gm20156 5 41934397 to 41935672 1275 - pseudogene predicted gene, 20156
Gm40294 5 42052935 to 42057050 4115 + lncRNA gene predicted gene, 40294
Gm16223 5 42067960 to 42216784 148824 + protein coding gene predicted gene 16223
D5Mit196 5 42102112 to 42102217 105 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 196
D5Mit129 5 42131193 to 42131340 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 129
Gm7181 5 42499981 to 42500414 433 - pseudogene predicted gene 7181
Gm40295 5 42513968 to 42525800 11832 - lncRNA gene predicted gene, 40295
Tssr46073 5 42615195 to 42615198 3 + TSS region transcription start site region 46073
Gm5554 5 42963404 to 42964609 1205 - pseudogene predicted gene 5554
D5Mit78a 5 43025477 to 43025719 242 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78a
D5Mit78b 5 43025477 to 43025599 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 78b
Gm43700 5 43026548 to 43038236 11688 - lincRNA gene predicted gene 43700
Gm42711 5 43039737 to 43044061 4324 - lincRNA gene predicted gene 42711
Tssr50856 5 43044044 to 43044070 26 - TSS region transcription start site region 50856
Gm42553 5 43059255 to 43060883 1628 + unclassified gene predicted gene 42553
Tssr46074 5 43062780 to 43062802 22 + TSS region transcription start site region 46074
Tssr46075 5 43103975 to 43103987 12 + TSS region transcription start site region 46075
Gm42552 5 43143831 to 43148327 4496 - unclassified gene predicted gene 42552
Gm7854 5 43151686 to 43235354 83668 - antisense lncRNA gene predicted gene 7854
Gm46911 5 43208701 to 43216243 7542 + protein coding gene predicted gene, 46911
Cpgi15830 5 43232441 to 43235578 3137 CpG island CpG island 15830
Tssr50857 5 43232777 to 43232846 69 - TSS region transcription start site region 50857
Cpeb2 5 43233170 to 43289724 56554 + protein coding gene cytoplasmic polyadenylation element binding protein 2
Tssr46076 5 43233217 to 43233237 20 + TSS region transcription start site region 46076
Tssr46077 5 43233243 to 43233259 16 + TSS region transcription start site region 46077
Tssr46078 5 43233485 to 43233491 6 + TSS region transcription start site region 46078
Tssr46079 5 43233677 to 43233685 8 + TSS region transcription start site region 46079
Tssr46080 5 43233694 to 43233703 9 + TSS region transcription start site region 46080
Tssr46081 5 43233714 to 43233717 3 + TSS region transcription start site region 46081
Tssr46082 5 43233732 to 43233741 9 + TSS region transcription start site region 46082
Tssr50858 5 43233833 to 43233839 6 - TSS region transcription start site region 50858
Tssr46083 5 43233886 to 43233895 9 + TSS region transcription start site region 46083
Tssr46084 5 43233928 to 43233951 23 + TSS region transcription start site region 46084
Tssr46085 5 43233962 to 43233979 17 + TSS region transcription start site region 46085