Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:37951438-38221558

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700061D14Rik 5 37969956 to 37983600 13644 unclassified gene RIKEN cDNA 1700061D14 gene
Tssr46036 5 37983685 to 37983694 9 + TSS region transcription start site region 46036
Gm40289 5 37983693 to 37986070 2377 + lincRNA gene predicted gene, 40289
Tssr1468 5 37983708 to 37983720 12 + TSS region transcription start site region 1468
Gm43762 5 38027715 to 38028009 294 - unclassified gene predicted gene 43762
Stx18 5 38038742 to 38137765 99023 + protein coding gene syntaxin 18
Cpgi15808 5 38038923 to 38039889 966 CpG island CpG island 15808
Tssr46037 5 38039197 to 38039219 22 + TSS region transcription start site region 46037
Tssr46038 5 38039224 to 38039299 75 + TSS region transcription start site region 46038
Tssr46039 5 38039304 to 38039322 18 + TSS region transcription start site region 46039
Tssr46040 5 38076497 to 38076508 11 + TSS region transcription start site region 46040
Tssr46041 5 38076519 to 38076534 15 + TSS region transcription start site region 46041
Tssr46042 5 38076563 to 38076572 9 + TSS region transcription start site region 46042
D5Dmo2 5 38086438 to 38086558 120 DNA segment DNA segment, Chr 5, David Ornitz 2
Tssr46043 5 38108142 to 38108150 8 + TSS region transcription start site region 46043
D5Wsu148e 5 38128456 to 38128705 249 DNA segment DNA segment, Chr 5, Wayne State University 148, expressed
Gm42858 5 38134394 to 38136097 1703 - unclassified gene predicted gene 42858
Nsg1 5 38137192 to 38159467 22275 - protein coding gene neuron specific gene family member 1
Cpgi15809 5 38158691 to 38160352 1661 CpG island CpG island 15809
Tssr50785 5 38158911 to 38158921 10 - TSS region transcription start site region 50785
Tssr50786 5 38158984 to 38158995 11 - TSS region transcription start site region 50786
Tssr50787 5 38159407 to 38159454 47 - TSS region transcription start site region 50787
Tssr50788 5 38159457 to 38159491 34 - TSS region transcription start site region 50788
Tssr50789 5 38159499 to 38159517 18 - TSS region transcription start site region 50789
Tssr50790 5 38159539 to 38159546 7 - TSS region transcription start site region 50790
Tssr50791 5 38159565 to 38159578 13 - TSS region transcription start site region 50791
Tssr50792 5 38159724 to 38159743 19 - TSS region transcription start site region 50792
D5Dmo3 5 38167229 to 38167327 98 DNA segment DNA segment, Chr 5, David Ornitz 3
Zbtb49 5 38189732 to 38220449 30717 - protein coding gene zinc finger and BTB domain containing 49
Cpgi15810 5 38219759 to 38221039 1280 CpG island CpG island 15810
Tssr46044 5 38219960 to 38219970 10 + TSS region transcription start site region 46044
Tssr50793 5 38220382 to 38220396 14 - TSS region transcription start site region 50793
Tssr50794 5 38220400 to 38220459 59 - TSS region transcription start site region 50794
Tssr46045 5 38220481 to 38220560 79 + TSS region transcription start site region 46045
Lyar 5 38220482 to 38234306 13824 + protein coding gene Ly1 antibody reactive clone
Tssr46046 5 38220577 to 38220588 11 + TSS region transcription start site region 46046
Tssr46047 5 38220592 to 38220603 11 + TSS region transcription start site region 46047
Tssr46048 5 38220628 to 38220649 21 + TSS region transcription start site region 46048