Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:36941825-38222153

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5D5Mit73-D5Mit351)5Jcs 5 26600987 to 37019120 10418133 chromosomal deletion deletion, Chr 5, John C. Schimenti 5
Del(5D5Mit73-D5Mit351)1J 5 26600987 to 37019120 10418133 chromosomal deletion deletion Chr 5, Jackson 1
Del(5D5Mit388-D5Mit351)4Jcs 5 33318099 to 37019120 3701021 chromosomal deletion deletion, Chr 5, John C. Schimenti 4
Ppp2r2c 5 36868513 to 36955078 86565 + protein coding gene protein phosphatase 2, regulatory subunit B, gamma
Tssr45995 5 36954053 to 36954058 5 + TSS region transcription start site region 45995
Wfs1 5 36966104 to 36988982 22878 - protein coding gene wolframin ER transmembrane glycoprotein
D5Dmo1 5 36966691 to 36966851 160 DNA segment DNA segment, Chr 5, David Ornitz 1
Cpgi15790 5 36988414 to 36989456 1042 CpG island CpG island 15790
Tssr50775 5 36988922 to 36988970 48 - TSS region transcription start site region 50775
D5Mit351 5 37019013 to 37019120 107 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 351
D5Mit351.1 5 37019182 to 37019314 132 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 351.1
Cpgi15791 5 37027909 to 37029835 1926 CpG island CpG island 15791
Tssr45996 5 37028317 to 37028328 11 + TSS region transcription start site region 45996
Tssr45997 5 37028329 to 37028376 47 + TSS region transcription start site region 45997
Jakmip1 5 37028335 to 37150607 122272 + protein coding gene janus kinase and microtubule interacting protein 1
Tssr45998 5 37028458 to 37028491 33 + TSS region transcription start site region 45998
Gm26647 5 37038164 to 37041646 3482 - antisense lncRNA gene predicted gene, 26647
Tssr45999 5 37044943 to 37044958 15 + TSS region transcription start site region 45999
Tssr46000 5 37046995 to 37047014 19 + TSS region transcription start site region 46000
Tssr46001 5 37047027 to 37047044 17 + TSS region transcription start site region 46001
Tssr46002 5 37047079 to 37047100 21 + TSS region transcription start site region 46002
Tssr46003 5 37047109 to 37047125 16 + TSS region transcription start site region 46003
Tssr46004 5 37047402 to 37047418 16 + TSS region transcription start site region 46004
Tssr46005 5 37047420 to 37047457 37 + TSS region transcription start site region 46005
Tssr46006 5 37047464 to 37047488 24 + TSS region transcription start site region 46006
Tssr46007 5 37050854 to 37050865 11 + TSS region transcription start site region 46007
Tssr46008 5 37050869 to 37050892 23 + TSS region transcription start site region 46008
Tssr46009 5 37050908 to 37050922 14 + TSS region transcription start site region 46009
Gm21042 5 37057416 to 37058487 1071 - pseudogene predicted gene, 21042
Cpgi15792 5 37091013 to 37091758 745 CpG island CpG island 15792
Tssr46010 5 37091074 to 37091085 11 + TSS region transcription start site region 46010
Tssr46011 5 37091483 to 37091523 40 + TSS region transcription start site region 46011
Gm25551 5 37092258 to 37092360 102 - rRNA gene predicted gene, 25551
D5Jcs57 5 37143718 to 37143855 137 DNA segment DNA segment, Chr 5, John C. Schimenti 57
Gm1043 5 37153129 to 37234484 81355 + protein coding gene predicted gene 1043
Tssr1463 5 37154335 to 37154345 10 + TSS region transcription start site region 1463
Cpgi15793 5 37162725 to 37163837 1112 CpG island CpG island 15793
D5Jcs58 5 37228126 to 37228287 161 DNA segment DNA segment, Chr 5, John C. Schimenti 58
Tssr46012 5 37229088 to 37229091 3 + TSS region transcription start site region 46012
Cpgi15794 5 37241411 to 37242981 1570 CpG island CpG island 15794
Tssr46013 5 37242025 to 37242081 56 + TSS region transcription start site region 46013
Crmp1 5 37242058 to 37292163 50105 + protein coding gene collapsin response mediator protein 1
Tssr46014 5 37242086 to 37242091 5 + TSS region transcription start site region 46014
Tssr46015 5 37242093 to 37242100 7 + TSS region transcription start site region 46015
Tssr46016 5 37242322 to 37242342 20 + TSS region transcription start site region 46016
Cpgi15795 5 37245251 to 37246729 1478 CpG island CpG island 15795
Tssr1464 5 37245754 to 37245761 7 + TSS region transcription start site region 1464
Tssr46017 5 37245823 to 37245883 60 + TSS region transcription start site region 46017
Tssr46018 5 37245938 to 37245949 11 + TSS region transcription start site region 46018
Tssr1465 5 37276268 to 37276304 36 + TSS region transcription start site region 1465
Tssr46019 5 37279661 to 37279671 10 + TSS region transcription start site region 46019
Tssr46020 5 37280549 to 37280573 24 + TSS region transcription start site region 46020
Tssr46021 5 37282905 to 37282925 20 + TSS region transcription start site region 46021
Tssr46022 5 37286387 to 37286410 23 + TSS region transcription start site region 46022
Tssr46023 5 37286430 to 37286441 11 + TSS region transcription start site region 46023
Tssr46024 5 37286471 to 37286490 19 + TSS region transcription start site region 46024
Tssr46025 5 37288841 to 37288874 33 + TSS region transcription start site region 46025
Tssr46026 5 37288912 to 37288933 21 + TSS region transcription start site region 46026
Evc 5 37289098 to 37336894 47796 - protein coding gene EvC ciliary complex subunit 1
Tssr46027 5 37291362 to 37291385 23 + TSS region transcription start site region 46027
Gm42935 5 37297630 to 37297780 150 - pseudogene predicted gene 42935
D5Jcs59 5 37319153 to 37319284 131 DNA segment DNA segment, Chr 5, John C. Schimenti 59
Cpgi15796 5 37336388 to 37337196 808 CpG island CpG island 15796
Tssr50776 5 37336837 to 37336864 27 - TSS region transcription start site region 50776
Tssr50777 5 37336870 to 37336899 29 - TSS region transcription start site region 50777
Tssr50778 5 37336934 to 37336945 11 - TSS region transcription start site region 50778
Cpgi15797 5 37338316 to 37338866 550 CpG island CpG island 15797
Tssr46028 5 37338455 to 37338551 96 + TSS region transcription start site region 46028
Evc2 5 37338499 to 37425055 86556 + protein coding gene EvC ciliary complex subunit 2
Tssr46029 5 37338599 to 37338619 20 + TSS region transcription start site region 46029
Tssr46030 5 37392014 to 37392019 5 + TSS region transcription start site region 46030
Gm15732 5 37404384 to 37404863 479 - pseudogene predicted gene 15732
Tssr46031 5 37417491 to 37417495 4 + TSS region transcription start site region 46031
Tssr1466 5 37419166 to 37419176 10 + TSS region transcription start site region 1466
D5Mit13 5 37424144 to 37424334 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 13
Hpi2 5 37424144 to 64649236 27225092 QTL hepatic PMN infiltration 2
Tssr50779 5 37434754 to 37434761 7 - TSS region transcription start site region 50779
Stk32b 5 37446825 to 37717153 270328 - protein coding gene serine/threonine kinase 32B
Tssr50780 5 37448445 to 37448452 7 - TSS region transcription start site region 50780
Tssr1467 5 37469647 to 37469648 1 + TSS region transcription start site region 1467
Tssr46032 5 37486998 to 37487003 5 + TSS region transcription start site region 46032
D5Mit182 5 37529649 to 37529790 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 182
Iba5 5 37529649 to 37529790 141 QTL induction of brown adipocytes 5
Tssr50781 5 37624830 to 37624850 20 - TSS region transcription start site region 50781
D5Mit354 5 37647595 to 37647780 185 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 354
Cpgi15798 5 37716586 to 37717349 763 CpG island CpG island 15798
Tssr50782 5 37717122 to 37717178 56 - TSS region transcription start site region 50782
Tssr50783 5 37717194 to 37717205 11 - TSS region transcription start site region 50783
Cytl1 5 37735519 to 37739820 4301 + protein coding gene cytokine-like 1
Tssr46033 5 37735526 to 37735545 19 + TSS region transcription start site region 46033
Tssr46034 5 37735612 to 37735630 18 + TSS region transcription start site region 46034
Tssr46035 5 37737273 to 37737282 9 + TSS region transcription start site region 46035
D5Mit421 5 37743306 to 37743425 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 421
Gm40286 5 37748095 to 37774165 26070 - lncRNA gene predicted gene, 40286
Gm43763 5 37807306 to 37808078 772 + lincRNA gene predicted gene 43763
Cpgi15799 5 37816823 to 37817823 1000 CpG island CpG island 15799
Cpgi15800 5 37818352 to 37818716 364 CpG island CpG island 15800
Msx1 5 37820491 to 37824585 4094 - protein coding gene msh homeobox 1
Msx1os 5 37820564 to 37822751 2187 + antisense lncRNA gene msh homeobox 1 opposite strand
Cpgi15801 5 37821184 to 37821679 495 CpG island CpG island 15801
Cpgi15802 5 37822994 to 37824862 1868 CpG island CpG island 15802
Tssr50784 5 37824580 to 37824584 4 - TSS region transcription start site region 50784
Gm33993 5 37825755 to 37852040 26285 + lncRNA gene predicted gene, 33993
Cpgi15803 5 37825814 to 37826119 305 CpG island CpG island 15803
Cpgi15804 5 37826622 to 37827719 1097 CpG island CpG island 15804
Cpgi15805 5 37828900 to 37829182 282 CpG island CpG island 15805
Gm40288 5 37831915 to 37835533 3618 - lncRNA gene predicted gene, 40288
Cpgi15806 5 37875370 to 37875592 222 CpG island CpG island 15806
Cpgi15807 5 37893716 to 37894024 308 CpG island CpG island 15807
Gm20052 5 37893772 to 37897917 4145 + lincRNA gene predicted gene, 20052
D5Mit390 5 37936489 to 37936609 120 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 390
1700061D14Rik 5 37969956 to 37983600 13644 unclassified gene RIKEN cDNA 1700061D14 gene
Tssr46036 5 37983685 to 37983694 9 + TSS region transcription start site region 46036
Gm40289 5 37983693 to 37986070 2377 + lincRNA gene predicted gene, 40289
Tssr1468 5 37983708 to 37983720 12 + TSS region transcription start site region 1468
Gm43762 5 38027715 to 38028009 294 - unclassified gene predicted gene 43762
Stx18 5 38038742 to 38137765 99023 + protein coding gene syntaxin 18
Cpgi15808 5 38038923 to 38039889 966 CpG island CpG island 15808
Tssr46037 5 38039197 to 38039219 22 + TSS region transcription start site region 46037
Tssr46038 5 38039224 to 38039299 75 + TSS region transcription start site region 46038
Tssr46039 5 38039304 to 38039322 18 + TSS region transcription start site region 46039
Tssr46040 5 38076497 to 38076508 11 + TSS region transcription start site region 46040
Tssr46041 5 38076519 to 38076534 15 + TSS region transcription start site region 46041
Tssr46042 5 38076563 to 38076572 9 + TSS region transcription start site region 46042
D5Dmo2 5 38086438 to 38086558 120 DNA segment DNA segment, Chr 5, David Ornitz 2
Tssr46043 5 38108142 to 38108150 8 + TSS region transcription start site region 46043
D5Wsu148e 5 38128456 to 38128705 249 DNA segment DNA segment, Chr 5, Wayne State University 148, expressed
Gm42858 5 38134394 to 38136097 1703 - unclassified gene predicted gene 42858
Nsg1 5 38137192 to 38159467 22275 - protein coding gene neuron specific gene family member 1
Cpgi15809 5 38158691 to 38160352 1661 CpG island CpG island 15809
Tssr50785 5 38158911 to 38158921 10 - TSS region transcription start site region 50785
Tssr50786 5 38158984 to 38158995 11 - TSS region transcription start site region 50786
Tssr50787 5 38159407 to 38159454 47 - TSS region transcription start site region 50787
Tssr50788 5 38159457 to 38159491 34 - TSS region transcription start site region 50788
Tssr50789 5 38159499 to 38159517 18 - TSS region transcription start site region 50789
Tssr50790 5 38159539 to 38159546 7 - TSS region transcription start site region 50790
Tssr50791 5 38159565 to 38159578 13 - TSS region transcription start site region 50791
Tssr50792 5 38159724 to 38159743 19 - TSS region transcription start site region 50792
D5Dmo3 5 38167229 to 38167327 98 DNA segment DNA segment, Chr 5, David Ornitz 3
Zbtb49 5 38189732 to 38220449 30717 - protein coding gene zinc finger and BTB domain containing 49
Cpgi15810 5 38219759 to 38221039 1280 CpG island CpG island 15810
Tssr46044 5 38219960 to 38219970 10 + TSS region transcription start site region 46044
Tssr50793 5 38220382 to 38220396 14 - TSS region transcription start site region 50793
Tssr50794 5 38220400 to 38220459 59 - TSS region transcription start site region 50794
Tssr46045 5 38220481 to 38220560 79 + TSS region transcription start site region 46045
Lyar 5 38220482 to 38234306 13824 + protein coding gene Ly1 antibody reactive clone
Tssr46046 5 38220577 to 38220588 11 + TSS region transcription start site region 46046
Tssr46047 5 38220592 to 38220603 11 + TSS region transcription start site region 46047
Tssr46048 5 38220628 to 38220649 21 + TSS region transcription start site region 46048
Lmb2 5 112317856 to 37424144 -74893712 QTL lupus in MRL and B6 F2 cross, QTL 2