Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:35733000-36054663

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sh3tc1 5 35697180 to 35739987 42807 - protein coding gene SH3 domain and tetratricopeptide repeats 1
D5Jcs53 5 35737885 to 35738039 154 DNA segment DNA segment, Chr 5, John C. Schimenti 53
Tssr50717 5 35740025 to 35740056 31 - TSS region transcription start site region 50717
Cpgi15775 5 35756955 to 35758695 1740 CpG island CpG island 15775
D5Jcs39 5 35757329 to 35757478 149 DNA segment DNA segment, Chr 5, John C. Schimenti 39
Tssr45958 5 35757875 to 35757946 71 + TSS region transcription start site region 45958
Ablim2 5 35757880 to 35884973 127093 + protein coding gene actin-binding LIM protein 2
Tssr45959 5 35757951 to 35757966 15 + TSS region transcription start site region 45959
Tssr45960 5 35786151 to 35786178 27 + TSS region transcription start site region 45960
Tssr50718 5 35790621 to 35790641 20 - TSS region transcription start site region 50718
Tssr45961 5 35814356 to 35814371 15 + TSS region transcription start site region 45961
Tssr45962 5 35814375 to 35814400 25 + TSS region transcription start site region 45962
Tssr45963 5 35814424 to 35814453 29 + TSS region transcription start site region 45963
Tssr45964 5 35814455 to 35814482 27 + TSS region transcription start site region 45964
D5Mit76 5 35853866 to 35854015 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 76
Cpgi15776 5 35893000 to 35894663 1663 CpG island CpG island 15776
Afap1 5 35893319 to 36003923 110604 + protein coding gene actin filament associated protein 1
Tssr45965 5 35893360 to 35893426 66 + TSS region transcription start site region 45965
Tssr45966 5 35893430 to 35893473 43 + TSS region transcription start site region 45966
Tssr45967 5 35913709 to 35913712 3 + TSS region transcription start site region 45967
H2af-ps 5 35917897 to 35918191 294 + pseudogene H2A histone family, pseudogene
D5Mit149 5 35919002 to 35919151 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 149
Tssr45968 5 35950881 to 35950895 14 + TSS region transcription start site region 45968
Tssr45969 5 35958879 to 35958885 6 + TSS region transcription start site region 45969
Tssr45970 5 36000354 to 36000359 5 + TSS region transcription start site region 45970
Tssr45971 5 36002046 to 36002090 44 + TSS region transcription start site region 45971
Tssr45972 5 36003402 to 36003412 10 + TSS region transcription start site region 45972
Sorcs2 5 36017180 to 36398139 380959 - protein coding gene sortilin-related VPS10 domain containing receptor 2
Tssr50719 5 36036958 to 36036974 16 - TSS region transcription start site region 50719
Tssr50720 5 36036974 to 36036994 20 - TSS region transcription start site region 50720
Tssr50721 5 36037029 to 36037041 12 - TSS region transcription start site region 50721
Tssr45973 5 36048655 to 36048660 5 + TSS region transcription start site region 45973