Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34856766-35287839

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Htt 5 34761740 to 34912534 150794 + protein coding gene huntingtin
Tssr45906 5 34865744 to 34865766 22 + TSS region transcription start site region 45906
Tssr45907 5 34898692 to 34898698 6 + TSS region transcription start site region 45907
Msantd1 5 34913571 to 34926991 13420 + protein coding gene Myb/SANT-like DNA-binding domain containing 1
Tssr45908 5 34917518 to 34917545 27 + TSS region transcription start site region 45908
D5Jcs85 5 34922747 to 34922904 157 DNA segment DNA segment, Chr 5, John C. Schimenti 85
D5Jcs86 5 34932867 to 34933030 163 DNA segment DNA segment, Chr 5, John C. Schimenti 86
Tssr50682 5 34942070 to 34942073 3 - TSS region transcription start site region 50682
Cpgi15760 5 34948748 to 34950198 1450 CpG island CpG island 15760
Tssr45909 5 34949364 to 34949369 5 + TSS region transcription start site region 45909
Tssr45910 5 34949435 to 34949504 69 + TSS region transcription start site region 45910
Rgs12 5 34949445 to 35039644 90199 + protein coding gene regulator of G-protein signaling 12
Tssr45911 5 34974814 to 34974825 11 + TSS region transcription start site region 45911
Tssr45912 5 34974981 to 34974999 18 + TSS region transcription start site region 45912
Tssr45913 5 34975132 to 34975173 41 + TSS region transcription start site region 45913
Tssr45914 5 34975244 to 34975256 12 + TSS region transcription start site region 45914
Tssr45915 5 34989383 to 34989403 20 + TSS region transcription start site region 45915
Tssr45916 5 34989536 to 34989545 9 + TSS region transcription start site region 45916
Tssr45917 5 34989630 to 34989675 45 + TSS region transcription start site region 45917
Tssr45918 5 34989697 to 34989719 22 + TSS region transcription start site region 45918
Tssr45919 5 34989726 to 34989776 50 + TSS region transcription start site region 45919
Tssr45920 5 34999046 to 34999069 23 + TSS region transcription start site region 45920
Tssr45921 5 34999070 to 34999086 16 + TSS region transcription start site region 45921
Tssr45922 5 34999111 to 34999117 6 + TSS region transcription start site region 45922
Mir3097 5 35021049 to 35021115 66 + miRNA gene microRNA 3097
Gm43791 5 35031870 to 35033445 1575 - antisense lncRNA gene predicted gene 43791
Hgfac 5 35041509 to 35048461 6952 + protein coding gene hepatocyte growth factor activator
Tssr45923 5 35041539 to 35041595 56 + TSS region transcription start site region 45923
Tssr45924 5 35041622 to 35041653 31 + TSS region transcription start site region 45924
Tssr45925 5 35042287 to 35042334 47 + TSS region transcription start site region 45925
Tssr45926 5 35042421 to 35042435 14 + TSS region transcription start site region 45926
Tssr45927 5 35042554 to 35042568 14 + TSS region transcription start site region 45927
Tssr45928 5 35045263 to 35045271 8 + TSS region transcription start site region 45928
Tssr45929 5 35045275 to 35045285 10 + TSS region transcription start site region 45929
Tssr45930 5 35046483 to 35046493 10 + TSS region transcription start site region 45930
Cpgi15761 5 35056261 to 35057755 1494 CpG island CpG island 15761
Dok7 5 35056766 to 35087839 31073 + protein coding gene docking protein 7
Tssr45931 5 35056850 to 35056895 45 + TSS region transcription start site region 45931
Tssr45932 5 35057059 to 35057096 37 + TSS region transcription start site region 45932
D5Mit420b 5 35065210 to 35065354 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420b
D5Mit420a 5 35065210 to 35065331 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420a
Lrpap1 5 35091506 to 35105697 14191 - protein coding gene low density lipoprotein receptor-related protein associated protein 1
Tssr50683 5 35093105 to 35093122 17 - TSS region transcription start site region 50683
Tssr50684 5 35094907 to 35094918 11 - TSS region transcription start site region 50684
Tssr50685 5 35094980 to 35094996 16 - TSS region transcription start site region 50685
Tssr50686 5 35096018 to 35096029 11 - TSS region transcription start site region 50686
Tssr45933 5 35098147 to 35098167 20 + TSS region transcription start site region 45933
Tssr50687 5 35102421 to 35102432 11 - TSS region transcription start site region 50687
Tssr50688 5 35102503 to 35102520 17 - TSS region transcription start site region 50688
Cpgi15762 5 35105321 to 35106031 710 CpG island CpG island 15762
Tssr50689 5 35105691 to 35105720 29 - TSS region transcription start site region 50689
D5Jcs87 5 35119222 to 35119378 156 DNA segment DNA segment, Chr 5, John C. Schimenti 87
D5Jcs88 5 35126558 to 35126716 158 DNA segment DNA segment, Chr 5, John C. Schimenti 88
Cpgi15763 5 35129228 to 35129452 224 CpG island CpG island 15763
Gm31601 5 35159897 to 35161341 1444 - lncRNA gene predicted gene, 31601
D5Mit268 5 35162921 to 35163081 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 268
Tgfbm1 5 35162921 to 35163081 160 QTL transforming growth factor beta, modifier 1
Tssr45934 5 35166295 to 35166313 18 + TSS region transcription start site region 45934
Tssr45935 5 35166379 to 35166393 14 + TSS region transcription start site region 45935
Tssr45936 5 35166434 to 35166445 11 + TSS region transcription start site region 45936
Tssr45937 5 35166503 to 35166525 22 + TSS region transcription start site region 45937
Tssr45938 5 35200328 to 35200331 3 + TSS region transcription start site region 45938
Gm40281 5 35229668 to 35266232 36564 + lncRNA gene predicted gene, 40281
Cpgi15764 5 35278411 to 35281507 3096 CpG island CpG island 15764
Adra2c 5 35278566 to 35281763 3197 + protein coding gene adrenergic receptor, alpha 2c
Tssr45939 5 35278911 to 35278926 15 + TSS region transcription start site region 45939
Tssr45940 5 35279185 to 35279218 33 + TSS region transcription start site region 45940