Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34646740-35027534

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Nop14 5 34638536 to 34660148 21612 - protein coding gene NOP14 nucleolar protein
Tssr50677 5 34650660 to 34650670 10 - TSS region transcription start site region 50677
Tssr45896 5 34650687 to 34650723 36 + TSS region transcription start site region 45896
Gm15522 5 34650718 to 34652477 1759 + antisense lncRNA gene predicted gene 15522
Tssr50678 5 34654007 to 34654018 11 - TSS region transcription start site region 50678
Tssr50679 5 34654462 to 34654511 49 - TSS region transcription start site region 50679
Cpgi15758 5 34659794 to 34661198 1404 CpG island CpG island 15758
Tssr50680 5 34660068 to 34660138 70 - TSS region transcription start site region 50680
Tssr45897 5 34660294 to 34660302 8 + TSS region transcription start site region 45897
Tssr45898 5 34660309 to 34660323 14 + TSS region transcription start site region 45898
Tssr45899 5 34660361 to 34660411 50 + TSS region transcription start site region 45899
Grk4 5 34660379 to 34755305 94926 + protein coding gene G protein-coupled receptor kinase 4
Tssr50681 5 34660564 to 34660595 31 - TSS region transcription start site region 50681
Gm42560 5 34679523 to 34706831 27308 - antisense lncRNA gene predicted gene 42560
Mir467g 5 34732853 to 34732972 119 - miRNA gene microRNA 467g
Cpgi15759 5 34761207 to 34762578 1371 CpG island CpG island 15759
Tssr45900 5 34761646 to 34761660 14 + TSS region transcription start site region 45900
Tssr45901 5 34761734 to 34761780 46 + TSS region transcription start site region 45901
Htt 5 34761740 to 34912534 150794 + protein coding gene huntingtin
Tssr45902 5 34761815 to 34761826 11 + TSS region transcription start site region 45902
D5Jcs84 5 34790162 to 34790306 144 DNA segment DNA segment, Chr 5, John C. Schimenti 84
D5Jcs83 5 34790170 to 34790324 154 DNA segment DNA segment, Chr 5, John C. Schimenti 83
Tssr45903 5 34801360 to 34801383 23 + TSS region transcription start site region 45903
Tssr45904 5 34821142 to 34821146 4 + TSS region transcription start site region 45904
Tssr45905 5 34827492 to 34827499 7 + TSS region transcription start site region 45905
Tssr45906 5 34865744 to 34865766 22 + TSS region transcription start site region 45906
Tssr45907 5 34898692 to 34898698 6 + TSS region transcription start site region 45907
Msantd1 5 34913571 to 34926991 13420 + protein coding gene Myb/SANT-like DNA-binding domain containing 1
Tssr45908 5 34917518 to 34917545 27 + TSS region transcription start site region 45908
D5Jcs85 5 34922747 to 34922904 157 DNA segment DNA segment, Chr 5, John C. Schimenti 85
D5Jcs86 5 34932867 to 34933030 163 DNA segment DNA segment, Chr 5, John C. Schimenti 86
Tssr50682 5 34942070 to 34942073 3 - TSS region transcription start site region 50682
Cpgi15760 5 34948748 to 34950198 1450 CpG island CpG island 15760
Tssr45909 5 34949364 to 34949369 5 + TSS region transcription start site region 45909
Tssr45910 5 34949435 to 34949504 69 + TSS region transcription start site region 45910
Rgs12 5 34949445 to 35039644 90199 + protein coding gene regulator of G-protein signaling 12
Tssr45911 5 34974814 to 34974825 11 + TSS region transcription start site region 45911
Tssr45912 5 34974981 to 34974999 18 + TSS region transcription start site region 45912
Tssr45913 5 34975132 to 34975173 41 + TSS region transcription start site region 45913
Tssr45914 5 34975244 to 34975256 12 + TSS region transcription start site region 45914
Tssr45915 5 34989383 to 34989403 20 + TSS region transcription start site region 45915
Tssr45916 5 34989536 to 34989545 9 + TSS region transcription start site region 45916
Tssr45917 5 34989630 to 34989675 45 + TSS region transcription start site region 45917
Tssr45918 5 34989697 to 34989719 22 + TSS region transcription start site region 45918
Tssr45919 5 34989726 to 34989776 50 + TSS region transcription start site region 45919
Tssr45920 5 34999046 to 34999069 23 + TSS region transcription start site region 45920
Tssr45921 5 34999070 to 34999086 16 + TSS region transcription start site region 45921
Tssr45922 5 34999111 to 34999117 6 + TSS region transcription start site region 45922
Mir3097 5 35021049 to 35021115 66 + miRNA gene microRNA 3097