Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:34341506-35855697

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250 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Letm1-Htt)1Jcs 5 33739675 to 34912534 1172859 chromosomal deletion deletion, Chr 5, John C Schimenti
Rnf4 5 34336250 to 34353445 17195 + protein coding gene ring finger protein 4
Tssr45871 5 34352083 to 34352112 29 + TSS region transcription start site region 45871
Tssr45872 5 34363379 to 34363380 1 + TSS region transcription start site region 45872
Cpgi15752 5 34369338 to 34370837 1499 CpG island CpG island 15752
Tssr45873 5 34369894 to 34369905 11 + TSS region transcription start site region 45873
Tssr45874 5 34369909 to 34369970 61 + TSS region transcription start site region 45874
Fam193a 5 34369933 to 34486456 116523 + protein coding gene family with sequence homology 193, member A
Tssr45875 5 34462176 to 34462179 3 + TSS region transcription start site region 45875
Tssr45876 5 34462184 to 34462195 11 + TSS region transcription start site region 45876
Gm42559 5 34469664 to 34473195 3531 + unclassified gene predicted gene 42559
Gm26931 5 34481914 to 34482522 608 - pseudogene predicted gene, 26931
Gm43457 5 34487314 to 34489722 2408 + unclassified gene predicted gene 43457
Tssr50661 5 34495290 to 34495335 45 - TSS region transcription start site region 50661
Tnip2 5 34496096 to 34513979 17883 - protein coding gene TNFAIP3 interacting protein 2
Tssr50662 5 34500832 to 34500835 3 - TSS region transcription start site region 50662
Tssr50663 5 34504460 to 34504464 4 - TSS region transcription start site region 50663
D5Jcs81 5 34508661 to 34508821 160 DNA segment DNA segment, Chr 5, John C. Schimenti 81
Cpgi15753 5 34513271 to 34514163 892 CpG island CpG island 15753
Tssr50664 5 34513703 to 34513714 11 - TSS region transcription start site region 50664
Tssr50665 5 34513892 to 34513984 92 - TSS region transcription start site region 50665
Cpgi15754 5 34525701 to 34526191 490 CpG island CpG island 15754
Tssr45877 5 34525777 to 34525788 11 + TSS region transcription start site region 45877
Tssr45878 5 34525797 to 34525869 72 + TSS region transcription start site region 45878
Sh3bp2 5 34525838 to 34563641 37803 + protein coding gene SH3-domain binding protein 2
Tssr50666 5 34526160 to 34526165 5 - TSS region transcription start site region 50666
Tssr45879 5 34530648 to 34530651 3 + TSS region transcription start site region 45879
Gm22847 5 34530649 to 34530753 104 + snRNA gene predicted gene, 22847
Tssr45880 5 34531963 to 34531984 21 + TSS region transcription start site region 45880
Tssr45881 5 34536127 to 34536176 49 + TSS region transcription start site region 45881
Tssr45882 5 34543377 to 34543429 52 + TSS region transcription start site region 45882
Tssr45883 5 34543431 to 34543442 11 + TSS region transcription start site region 45883
Tssr45884 5 34547844 to 34547845 1 + TSS region transcription start site region 45884
Cpgi15755 5 34549384 to 34550224 840 CpG island CpG island 15755
Tssr45885 5 34549544 to 34549552 8 + TSS region transcription start site region 45885
Tssr45886 5 34549568 to 34549581 13 + TSS region transcription start site region 45886
Tssr45887 5 34549595 to 34549631 36 + TSS region transcription start site region 45887
D5Jcs82 5 34550205 to 34550370 165 DNA segment DNA segment, Chr 5, John C. Schimenti 82
Tssr45888 5 34557310 to 34557324 14 + TSS region transcription start site region 45888
Tssr45889 5 34559100 to 34559131 31 + TSS region transcription start site region 45889
Tssr45890 5 34559437 to 34559472 35 + TSS region transcription start site region 45890
Cpgi15756 5 34573298 to 34574409 1111 CpG island CpG island 15756
Tssr45891 5 34573694 to 34573737 43 + TSS region transcription start site region 45891
Add1 5 34573714 to 34632305 58591 + protein coding gene adducin 1 (alpha)
Tssr45892 5 34573744 to 34573792 48 + TSS region transcription start site region 45892
Tssr45893 5 34573808 to 34573875 67 + TSS region transcription start site region 45893
Tssr45894 5 34573876 to 34573881 5 + TSS region transcription start site region 45894
Mir7036b 5 34574151 to 34574213 62 + miRNA gene microRNA 7036b
Gm42867 5 34575088 to 34575556 468 + unclassified gene predicted gene 42867
Tssr45895 5 34584980 to 34584984 4 + TSS region transcription start site region 45895
Mfsd10 5 34633644 to 34637209 3565 - protein coding gene major facilitator superfamily domain containing 10
Tssr50667 5 34634706 to 34634729 23 - TSS region transcription start site region 50667
Tssr50668 5 34634857 to 34634884 27 - TSS region transcription start site region 50668
Tssr50669 5 34634885 to 34634933 48 - TSS region transcription start site region 50669
Tssr50670 5 34634953 to 34634958 5 - TSS region transcription start site region 50670
Tssr50671 5 34635011 to 34635023 12 - TSS region transcription start site region 50671
Cpgi15757 5 34636390 to 34637274 884 CpG island CpG island 15757
Tssr50672 5 34636489 to 34636540 51 - TSS region transcription start site region 50672
Tssr50673 5 34636990 to 34637008 18 - TSS region transcription start site region 50673
Tssr50674 5 34637067 to 34637081 14 - TSS region transcription start site region 50674
Tssr50675 5 34637107 to 34637200 93 - TSS region transcription start site region 50675
Tssr50676 5 34637203 to 34637216 13 - TSS region transcription start site region 50676
Nop14 5 34638536 to 34660148 21612 - protein coding gene NOP14 nucleolar protein
Tssr50677 5 34650660 to 34650670 10 - TSS region transcription start site region 50677
Tssr45896 5 34650687 to 34650723 36 + TSS region transcription start site region 45896
Gm15522 5 34650718 to 34652477 1759 + antisense lncRNA gene predicted gene 15522
Tssr50678 5 34654007 to 34654018 11 - TSS region transcription start site region 50678
Tssr50679 5 34654462 to 34654511 49 - TSS region transcription start site region 50679
Cpgi15758 5 34659794 to 34661198 1404 CpG island CpG island 15758
Tssr50680 5 34660068 to 34660138 70 - TSS region transcription start site region 50680
Tssr45897 5 34660294 to 34660302 8 + TSS region transcription start site region 45897
Tssr45898 5 34660309 to 34660323 14 + TSS region transcription start site region 45898
Tssr45899 5 34660361 to 34660411 50 + TSS region transcription start site region 45899
Grk4 5 34660379 to 34755305 94926 + protein coding gene G protein-coupled receptor kinase 4
Tssr50681 5 34660564 to 34660595 31 - TSS region transcription start site region 50681
Gm42560 5 34679523 to 34706831 27308 - antisense lncRNA gene predicted gene 42560
Mir467g 5 34732853 to 34732972 119 - miRNA gene microRNA 467g
Cpgi15759 5 34761207 to 34762578 1371 CpG island CpG island 15759
Tssr45900 5 34761646 to 34761660 14 + TSS region transcription start site region 45900
Tssr45901 5 34761734 to 34761780 46 + TSS region transcription start site region 45901
Htt 5 34761740 to 34912534 150794 + protein coding gene huntingtin
Tssr45902 5 34761815 to 34761826 11 + TSS region transcription start site region 45902
D5Jcs84 5 34790162 to 34790306 144 DNA segment DNA segment, Chr 5, John C. Schimenti 84
D5Jcs83 5 34790170 to 34790324 154 DNA segment DNA segment, Chr 5, John C. Schimenti 83
Tssr45903 5 34801360 to 34801383 23 + TSS region transcription start site region 45903
Tssr45904 5 34821142 to 34821146 4 + TSS region transcription start site region 45904
Tssr45905 5 34827492 to 34827499 7 + TSS region transcription start site region 45905
Tssr45906 5 34865744 to 34865766 22 + TSS region transcription start site region 45906
Tssr45907 5 34898692 to 34898698 6 + TSS region transcription start site region 45907
Msantd1 5 34913571 to 34926991 13420 + protein coding gene Myb/SANT-like DNA-binding domain containing 1
Tssr45908 5 34917518 to 34917545 27 + TSS region transcription start site region 45908
D5Jcs85 5 34922747 to 34922904 157 DNA segment DNA segment, Chr 5, John C. Schimenti 85
D5Jcs86 5 34932867 to 34933030 163 DNA segment DNA segment, Chr 5, John C. Schimenti 86
Tssr50682 5 34942070 to 34942073 3 - TSS region transcription start site region 50682
Cpgi15760 5 34948748 to 34950198 1450 CpG island CpG island 15760
Tssr45909 5 34949364 to 34949369 5 + TSS region transcription start site region 45909
Tssr45910 5 34949435 to 34949504 69 + TSS region transcription start site region 45910
Rgs12 5 34949445 to 35039644 90199 + protein coding gene regulator of G-protein signaling 12
Tssr45911 5 34974814 to 34974825 11 + TSS region transcription start site region 45911
Tssr45912 5 34974981 to 34974999 18 + TSS region transcription start site region 45912
Tssr45913 5 34975132 to 34975173 41 + TSS region transcription start site region 45913
Tssr45914 5 34975244 to 34975256 12 + TSS region transcription start site region 45914
Tssr45915 5 34989383 to 34989403 20 + TSS region transcription start site region 45915
Tssr45916 5 34989536 to 34989545 9 + TSS region transcription start site region 45916
Tssr45917 5 34989630 to 34989675 45 + TSS region transcription start site region 45917
Tssr45918 5 34989697 to 34989719 22 + TSS region transcription start site region 45918
Tssr45919 5 34989726 to 34989776 50 + TSS region transcription start site region 45919
Tssr45920 5 34999046 to 34999069 23 + TSS region transcription start site region 45920
Tssr45921 5 34999070 to 34999086 16 + TSS region transcription start site region 45921
Tssr45922 5 34999111 to 34999117 6 + TSS region transcription start site region 45922
Mir3097 5 35021049 to 35021115 66 + miRNA gene microRNA 3097
Gm43791 5 35031870 to 35033445 1575 - antisense lncRNA gene predicted gene 43791
Hgfac 5 35041509 to 35048461 6952 + protein coding gene hepatocyte growth factor activator
Tssr45923 5 35041539 to 35041595 56 + TSS region transcription start site region 45923
Tssr45924 5 35041622 to 35041653 31 + TSS region transcription start site region 45924
Tssr45925 5 35042287 to 35042334 47 + TSS region transcription start site region 45925
Tssr45926 5 35042421 to 35042435 14 + TSS region transcription start site region 45926
Tssr45927 5 35042554 to 35042568 14 + TSS region transcription start site region 45927
Tssr45928 5 35045263 to 35045271 8 + TSS region transcription start site region 45928
Tssr45929 5 35045275 to 35045285 10 + TSS region transcription start site region 45929
Tssr45930 5 35046483 to 35046493 10 + TSS region transcription start site region 45930
Cpgi15761 5 35056261 to 35057755 1494 CpG island CpG island 15761
Dok7 5 35056766 to 35087839 31073 + protein coding gene docking protein 7
Tssr45931 5 35056850 to 35056895 45 + TSS region transcription start site region 45931
Tssr45932 5 35057059 to 35057096 37 + TSS region transcription start site region 45932
D5Mit420b 5 35065210 to 35065354 144 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420b
D5Mit420a 5 35065210 to 35065331 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 420a
Lrpap1 5 35091506 to 35105697 14191 - protein coding gene low density lipoprotein receptor-related protein associated protein 1
Tssr50683 5 35093105 to 35093122 17 - TSS region transcription start site region 50683
Tssr50684 5 35094907 to 35094918 11 - TSS region transcription start site region 50684
Tssr50685 5 35094980 to 35094996 16 - TSS region transcription start site region 50685
Tssr50686 5 35096018 to 35096029 11 - TSS region transcription start site region 50686
Tssr45933 5 35098147 to 35098167 20 + TSS region transcription start site region 45933
Tssr50687 5 35102421 to 35102432 11 - TSS region transcription start site region 50687
Tssr50688 5 35102503 to 35102520 17 - TSS region transcription start site region 50688
Cpgi15762 5 35105321 to 35106031 710 CpG island CpG island 15762
Tssr50689 5 35105691 to 35105720 29 - TSS region transcription start site region 50689
D5Jcs87 5 35119222 to 35119378 156 DNA segment DNA segment, Chr 5, John C. Schimenti 87
D5Jcs88 5 35126558 to 35126716 158 DNA segment DNA segment, Chr 5, John C. Schimenti 88
Cpgi15763 5 35129228 to 35129452 224 CpG island CpG island 15763
Gm31601 5 35159897 to 35161341 1444 - lncRNA gene predicted gene, 31601
D5Mit268 5 35162921 to 35163081 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 268
Tgfbm1 5 35162921 to 35163081 160 QTL transforming growth factor beta, modifier 1
Tssr45934 5 35166295 to 35166313 18 + TSS region transcription start site region 45934
Tssr45935 5 35166379 to 35166393 14 + TSS region transcription start site region 45935
Tssr45936 5 35166434 to 35166445 11 + TSS region transcription start site region 45936
Tssr45937 5 35166503 to 35166525 22 + TSS region transcription start site region 45937
Tssr45938 5 35200328 to 35200331 3 + TSS region transcription start site region 45938
Gm40281 5 35229668 to 35266232 36564 + lncRNA gene predicted gene, 40281
Cpgi15764 5 35278411 to 35281507 3096 CpG island CpG island 15764
Adra2c 5 35278566 to 35281763 3197 + protein coding gene adrenergic receptor, alpha 2c
Tssr45939 5 35278911 to 35278926 15 + TSS region transcription start site region 45939
Tssr45940 5 35279185 to 35279218 33 + TSS region transcription start site region 45940
D5Jcs37 5 35298636 to 35298785 149 DNA segment DNA segment, Chr 5, John C. Schimenti 37
Gm31656 5 35313971 to 35341774 27803 + lncRNA gene predicted gene, 31656
Tssr45941 5 35361549 to 35361565 16 + TSS region transcription start site region 45941
4930478P22Rik 5 35361553 to 35367677 6124 + lincRNA gene RIKEN cDNA 4930478P22 gene
D5Jcs38 5 35366007 to 35366156 149 DNA segment DNA segment, Chr 5, John C. Schimenti 38
E130018O15Rik 5 35379152 to 35388476 9324 - lincRNA gene RIKEN cDNA E130018O15 gene
Cpgi15765 5 35388059 to 35390063 2004 CpG island CpG island 15765
Tssr45942 5 35388844 to 35388882 38 + TSS region transcription start site region 45942
Tssr45943 5 35388927 to 35388932 5 + TSS region transcription start site region 45943
Tssr45944 5 35388963 to 35388974 11 + TSS region transcription start site region 45944
Tssr45945 5 35389018 to 35389031 13 + TSS region transcription start site region 45945
Hmx1 5 35389108 to 35399730 10622 + protein coding gene H6 homeobox 1
4930442P19Rik 5 35390673 to 35391912 1239 - unclassified gene RIKEN cDNA 4930442P19 gene
Cpgi15766 5 35391167 to 35393250 2083 CpG island CpG island 15766
Tssr50690 5 35391906 to 35391918 12 - TSS region transcription start site region 50690
Tssr45946 5 35392838 to 35392842 4 + TSS region transcription start site region 45946
Tssr45947 5 35395656 to 35395662 6 + TSS region transcription start site region 45947
Gm43377 5 35396098 to 35396552 454 + unclassified gene predicted gene 43377
Cpgi15767 5 35397008 to 35398410 1402 CpG island CpG island 15767
Cpgi15768 5 35399582 to 35400168 586 CpG island CpG island 15768
Tssr50691 5 35399960 to 35399969 9 - TSS region transcription start site region 50691
Tssr50692 5 35400015 to 35400023 8 - TSS region transcription start site region 50692
D5Jcs49 5 35405754 to 35405912 158 DNA segment DNA segment, Chr 5, John C. Schimenti 49
Gm40283 5 35413349 to 35423688 10339 + lncRNA gene predicted gene, 40283
Tssr45948 5 35413349 to 35413376 27 + TSS region transcription start site region 45948
Cpgi15769 5 35448157 to 35448337 180 CpG island CpG island 15769
D5Mit126 5 35459246 to 35459357 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 126
Cpz 5 35502218 to 35525626 23408 - protein coding gene carboxypeptidase Z
Irm2 5 35518973 to 35518973 0 QTL inflammatory response modulator 2
Cpgi15770 5 35525357 to 35526004 647 CpG island CpG island 15770
Tssr50693 5 35525542 to 35525566 24 - TSS region transcription start site region 50693
Tssr50694 5 35525567 to 35525617 50 - TSS region transcription start site region 50694
Tssr50695 5 35525691 to 35525705 14 - TSS region transcription start site region 50695
Cpgi15771 5 35531688 to 35531873 185 CpG island CpG island 15771
D5Jcs50 5 35539769 to 35539923 154 DNA segment DNA segment, Chr 5, John C. Schimenti 50
Gm43860 5 35551260 to 35553964 2704 - unclassified gene predicted gene 43860
Plk-ps1 5 35554184 to 35555970 1786 + pseudogene polo like kinase, pseudogene 1
Trmt44 5 35556208 to 35575070 18862 - protein coding gene tRNA methyltransferase 44
Cpgi15772 5 35574495 to 35575261 766 CpG island CpG island 15772
Tssr50696 5 35575046 to 35575083 37 - TSS region transcription start site region 50696
Tssr45949 5 35575116 to 35575150 34 + TSS region transcription start site region 45949
D5Mit4 5 35578005 to 35578202 197 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 4
4931431C16Rik 5 35581227 to 35588763 7536 - antisense lncRNA gene RIKEN cDNA 4931431C16 gene
Cpgi15773 5 35582770 to 35583531 761 CpG island CpG island 15773
Acox3 5 35582964 to 35614208 31244 + protein coding gene acyl-Coenzyme A oxidase 3, pristanoyl
Tssr45950 5 35583018 to 35583110 92 + TSS region transcription start site region 45950
Tssr45951 5 35583689 to 35583711 22 + TSS region transcription start site region 45951