Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:32384570-33585818

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm7596 5 32390047 to 32397908 7861 - lincRNA gene predicted gene 7596
D5Mit334 5 32417678 to 32417799 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 334
Gm5864 5 32420003 to 32420972 969 + pseudogene predicted gene 5864
D5Mit252 5 32442185 to 32442322 137 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 252
Cpgi15720 5 32458481 to 32459832 1351 CpG island CpG island 15720
Tssr50587 5 32458800 to 32458822 22 - TSS region transcription start site region 50587
Ppp1cb 5 32458848 to 32493712 34864 + protein coding gene protein phosphatase 1 catalytic subunit beta
Tssr1453 5 32458957 to 32458968 11 + TSS region transcription start site region 1453
Tssr45773 5 32459016 to 32459110 94 + TSS region transcription start site region 45773
Tssr45774 5 32459135 to 32459174 39 + TSS region transcription start site region 45774
Tssr45775 5 32459176 to 32459189 13 + TSS region transcription start site region 45775
Tssr45776 5 32459238 to 32459249 11 + TSS region transcription start site region 45776
Tssr45777 5 32459251 to 32459291 40 + TSS region transcription start site region 45777
Tssr45778 5 32459297 to 32459355 58 + TSS region transcription start site region 45778
Tssr45779 5 32459591 to 32459601 10 + TSS region transcription start site region 45779
Gm43312 5 32459828 to 32462293 2465 + unclassified gene predicted gene 43312
Tssr45780 5 32459994 to 32459998 4 + TSS region transcription start site region 45780
Gm43313 5 32467195 to 32469429 2234 + unclassified gene predicted gene 43313
D5Mit296 5 32476740 to 32476846 106 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 296
Estq2 5 32476740 to 32476846 106 QTL estradiol regulated response QTL 2
Gm15613 5 32479560 to 32479885 325 - pseudogene predicted gene 15613
Tssr45781 5 32487639 to 32487655 16 + TSS region transcription start site region 45781
Tssr45782 5 32490992 to 32491017 25 + TSS region transcription start site region 45782
Tssr45783 5 32491376 to 32491446 70 + TSS region transcription start site region 45783
Tssr45784 5 32491867 to 32491910 43 + TSS region transcription start site region 45784
Tssr45785 5 32491973 to 32491982 9 + TSS region transcription start site region 45785
Tssr1454 5 32492281 to 32492296 15 + TSS region transcription start site region 1454
Tssr45786 5 32492320 to 32492333 13 + TSS region transcription start site region 45786
Gm15614 5 32507184 to 32583386 76202 - antisense lncRNA gene predicted gene 15614
Gm42964 5 32547936 to 32548317 381 - pseudogene predicted gene 42964
Gm43812 5 32550660 to 32557462 6802 + pseudogene predicted gene 43812
Gm10461 5 32607020 to 32611805 4785 - unclassified gene predicted gene 10461
Tssr45787 5 32610305 to 32610314 9 + TSS region transcription start site region 45787
Tssr45788 5 32610325 to 32610335 10 + TSS region transcription start site region 45788
Tssr45789 5 32610354 to 32610374 20 + TSS region transcription start site region 45789
Cpgi15721 5 32610518 to 32611995 1477 CpG island CpG island 15721
Yes1 5 32611171 to 32687057 75886 + protein coding gene YES proto-oncogene 1, Src family tyrosine kinase
Tssr45790 5 32611195 to 32611245 50 + TSS region transcription start site region 45790
Tssr45791 5 32611247 to 32611265 18 + TSS region transcription start site region 45791
Tssr45792 5 32613489 to 32613494 5 + TSS region transcription start site region 45792
Gm43694 5 32629842 to 32630960 1118 + unclassified gene predicted gene 43694
Tssr45793 5 32637263 to 32637268 5 + TSS region transcription start site region 45793
Gm43852 5 32713072 to 32713988 916 - unclassified gene predicted gene 43852
Cpgi15722 5 32713606 to 32713987 381 CpG island CpG island 15722
Gm2420 5 32720330 to 32736194 15864 + pseudogene predicted gene 2420
Pisd 5 32736303 to 32785636 49333 - protein coding gene phosphatidylserine decarboxylase
Gm20671 5 32737230 to 32827109 89879 - protein coding gene predicted gene 20671
Gm43695 5 32739058 to 32739334 276 - unclassified non-coding RNA gene predicted gene 43695
Tssr50588 5 32742247 to 32742255 8 - TSS region transcription start site region 50588
Tssr45794 5 32746119 to 32746124 5 + TSS region transcription start site region 45794
Tssr50589 5 32746272 to 32746313 41 - TSS region transcription start site region 50589
Tssr50590 5 32746317 to 32746341 24 - TSS region transcription start site region 50590
Tssr50591 5 32746343 to 32746352 9 - TSS region transcription start site region 50591
Tssr45795 5 32746521 to 32746549 28 + TSS region transcription start site region 45795
Cpgi15724 5 32785189 to 32785973 784 CpG island CpG island 15724
Tssr50592 5 32785609 to 32785648 39 - TSS region transcription start site region 50592
Prr14l 5 32789820 to 32854256 64436 - protein coding gene proline rich 14-like
Gm43692 5 32799904 to 32800965 1061 - unclassified gene predicted gene 43692
Tssr50593 5 32820690 to 32820707 17 - TSS region transcription start site region 50593
Tssr45796 5 32838095 to 32838107 12 + TSS region transcription start site region 45796
Gm2623 5 32838129 to 32838414 285 + pseudogene predicted gene 2623
Cpgi15725 5 32853761 to 32854524 763 CpG island CpG island 15725
Tssr50594 5 32854185 to 32854248 63 - TSS region transcription start site region 50594
Cpgi15726 5 32863408 to 32864234 826 CpG island CpG island 15726
Tssr45797 5 32863700 to 32863776 76 + TSS region transcription start site region 45797
Depdc5 5 32863701 to 32994236 130535 + protein coding gene DEP domain containing 5
Tssr45798 5 32898319 to 32898353 34 + TSS region transcription start site region 45798
Tssr50595 5 32907642 to 32907664 22 - TSS region transcription start site region 50595
Tssr45799 5 32909343 to 32909346 3 + TSS region transcription start site region 45799
Gm24003 5 32913631 to 32913730 99 + snRNA gene predicted gene, 24003
D5Ertd477e 5 32946187 to 32946421 234 DNA segment DNA segment, Chr 5, ERATO Doi 477, expressed
Tssr45800 5 32979142 to 32979144 2 + TSS region transcription start site region 45800
Gm43693 5 32984570 to 32985818 1248 + unclassified gene predicted gene 43693
Tssr50596 5 32985614 to 32985650 36 - TSS region transcription start site region 50596
Cpgi15727 5 33018207 to 33019769 1562 CpG island CpG island 15727
Tssr1455 5 33018638 to 33018668 30 - TSS region transcription start site region 1455
Tssr45801 5 33018769 to 33018770 1 + TSS region transcription start site region 45801
Ywhah 5 33018816 to 33027966 9150 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide
Tssr45802 5 33018834 to 33018865 31 + TSS region transcription start site region 45802
Tssr45803 5 33018867 to 33018885 18 + TSS region transcription start site region 45803
Tssr45804 5 33018887 to 33018903 16 + TSS region transcription start site region 45804
Tssr45805 5 33018946 to 33018965 19 + TSS region transcription start site region 45805
Tssr45806 5 33018990 to 33019015 25 + TSS region transcription start site region 45806
Tssr45807 5 33019048 to 33019054 6 + TSS region transcription start site region 45807
Gm29892 5 33031178 to 33040025 8847 + lncRNA gene predicted gene, 29892
Gm40278 5 33040443 to 33043330 2887 + lncRNA gene predicted gene, 40278
Gm43849 5 33049985 to 33050199 214 + pseudogene predicted gene 43849
Tssr1456 5 33061916 to 33061919 3 + TSS region transcription start site region 1456
Rpl35a-ps5 5 33076038 to 33076370 332 + pseudogene ribosomal protein L35A, pseudogene 5
Cpgi15728 5 33104182 to 33104683 501 CpG island CpG island 15728
Slc5a1 5 33104219 to 33162699 58480 + protein coding gene solute carrier family 5 (sodium/glucose cotransporter), member 1
Tssr45808 5 33104220 to 33104240 20 + TSS region transcription start site region 45808
Tssr45809 5 33104420 to 33104436 16 + TSS region transcription start site region 45809
Tssr1457 5 33105098 to 33105104 6 - TSS region transcription start site region 1457
Tssr45810 5 33112106 to 33112113 7 + TSS region transcription start site region 45810
Gm15936 5 33126802 to 33127261 459 + pseudogene predicted gene 15936
5033423K11Rik 5 33140949 to 33142422 1473 - pseudogene RIKEN cDNA 5033423K11 gene
Tssr45811 5 33148951 to 33148961 10 + TSS region transcription start site region 45811
Tssr45812 5 33162143 to 33162154 11 + TSS region transcription start site region 45812
D5Mit419 5 33212244 to 33212367 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 419
Spon2 5 33213518 to 33218254 4736 - protein coding gene spondin 2, extracellular matrix protein
Tssr50597 5 33218160 to 33218222 62 - TSS region transcription start site region 50597
Tssr50598 5 33218229 to 33218243 14 - TSS region transcription start site region 50598
Ctbp1 5 33247723 to 33274994 27271 - protein coding gene C-terminal binding protein 1
Gm43850 5 33255318 to 33256362 1044 + pseudogene predicted gene 43850
Tssr50599 5 33270641 to 33270660 19 - TSS region transcription start site region 50599
Cpgi15729 5 33273894 to 33275509 1615 CpG island CpG island 15729
Tssr50600 5 33274954 to 33274965 11 - TSS region transcription start site region 50600
Tssr50601 5 33274966 to 33275010 44 - TSS region transcription start site region 50601
Tssr45813 5 33288059 to 33288063 4 + TSS region transcription start site region 45813
Gm20465 5 33293612 to 33297473 3861 - lincRNA gene predicted gene 20465
D5Mit388 5 33318099 to 33318293 194 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 388
Del(5D5Mit388-D5Mit351)4Jcs 5 33318099 to 37019120 3701021 chromosomal deletion deletion, Chr 5, John C. Schimenti 4
Mom5 5 33318293 to 8797672 -24520621 QTL modifier of Min 5
Cpgi15730 5 33335087 to 33336318 1231 CpG island CpG island 15730
Tssr45814 5 33335540 to 33335571 31 + TSS region transcription start site region 45814
Maea 5 33335572 to 33373294 37722 + protein coding gene macrophage erythroblast attacher
Tssr50602 5 33335796 to 33335804 8 - TSS region transcription start site region 50602
Tssr45815 5 33336227 to 33336254 27 + TSS region transcription start site region 45815
Tssr45816 5 33336270 to 33336281 11 + TSS region transcription start site region 45816
Tssr45817 5 33337056 to 33337060 4 + TSS region transcription start site region 45817
D5Jcs35 5 33353697 to 33353843 146 DNA segment DNA segment, Chr 5, John C. Schimenti 35
Tssr45818 5 33368693 to 33368718 25 + TSS region transcription start site region 45818
Tssr45819 5 33371684 to 33371721 37 + TSS region transcription start site region 45819
Cpgi15731 5 33377871 to 33379113 1242 CpG island CpG island 15731
Tssr45820 5 33378529 to 33378584 55 + TSS region transcription start site region 45820
Uvssa 5 33378549 to 33419754 41205 + protein coding gene UV stimulated scaffold protein A
Tssr45821 5 33378729 to 33378798 69 + TSS region transcription start site region 45821
Tssr45822 5 33417854 to 33417858 4 + TSS region transcription start site region 45822
Tssr45823 5 33427805 to 33427812 7 + TSS region transcription start site region 45823
Cpgi15732 5 33430168 to 33435562 5394 CpG island CpG island 15732
Nkx1-1 5 33430734 to 33433976 3242 - protein coding gene NK1 homeobox 1
Gm43851 5 33436625 to 33437464 839 - lincRNA gene predicted gene 43851
Cpgi15733 5 33438222 to 33438618 396 CpG island CpG island 15733
Cpgi15734 5 33442788 to 33443617 829 CpG island CpG island 15734
Tssr50603 5 33493404 to 33493408 4 - TSS region transcription start site region 50603
Tssr50604 5 33518970 to 33518981 11 - TSS region transcription start site region 50604
Tssr50605 5 33524171 to 33524182 11 - TSS region transcription start site region 50605
Cpgi15735 5 33534967 to 33535282 315 CpG island CpG island 15735
Tssr50606 5 33535455 to 33535487 32 - TSS region transcription start site region 50606
Tssr50607 5 33535623 to 33535630 7 - TSS region transcription start site region 50607
Cpgi15736 5 33540015 to 33540429 414 CpG island CpG island 15736
D5Jcs44 5 33566509 to 33566672 163 DNA segment DNA segment, Chr 5, John C. Schimenti 44