Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:31277547-31529241

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ift172 5 31253279 to 31291114 37835 - protein coding gene intraflagellar transport 172
Cpgi15710 5 31290824 to 31291482 658 CpG island CpG island 15710
Tssr50545 5 31291013 to 31291024 11 - TSS region transcription start site region 50545
Tssr50546 5 31291026 to 31291143 117 - TSS region transcription start site region 50546
Tssr45700 5 31291228 to 31291242 14 + TSS region transcription start site region 45700
Tssr45701 5 31291352 to 31291365 13 + TSS region transcription start site region 45701
Fndc4 5 31292245 to 31295956 3711 - protein coding gene fibronectin type III domain containing 4
Cpgi15711 5 31295253 to 31296168 915 CpG island CpG island 15711
Tssr50547 5 31295673 to 31295697 24 - TSS region transcription start site region 50547
Tssr50548 5 31295862 to 31295942 80 - TSS region transcription start site region 50548
Gckr 5 31297443 to 31327314 29871 + protein coding gene glucokinase regulatory protein
Tssr45702 5 31297551 to 31297586 35 + TSS region transcription start site region 45702
Tssr45703 5 31297597 to 31297602 5 + TSS region transcription start site region 45703
Tssr45704 5 31297603 to 31297616 13 + TSS region transcription start site region 45704
Tssr45705 5 31297794 to 31297797 3 + TSS region transcription start site region 45705
Gm19457 5 31356315 to 31356743 428 - pseudogene predicted gene, 19457
Gm40275 5 31402547 to 31404241 1694 - protein coding gene predicted gene, 40275
Gm45944 5 31405867 to 31408311 2444 - protein coding gene predicted gene, 45944
Gm36182 5 31412188 to 31415591 3403 - lncRNA gene predicted gene, 36182
Gm43659 5 31450824 to 31451451 627 + pseudogene predicted gene 43659
4930478M09Rik 5 31451219 to 31452331 1112 - unclassified gene RIKEN cDNA 4930478M09 gene
Cpgi15712 5 31452333 to 31452513 180 CpG island CpG island 15712
Tssr45706 5 31452427 to 31452452 25 + TSS region transcription start site region 45706
Zfp512 5 31452431 to 31481754 29323 + protein coding gene zinc finger protein 512
Tssr45707 5 31452458 to 31452503 45 + TSS region transcription start site region 45707
Tssr45708 5 31452525 to 31452534 9 + TSS region transcription start site region 45708
Tssr45709 5 31452683 to 31452688 5 + TSS region transcription start site region 45709
Gm43059 5 31461022 to 31462409 1387 + unclassified gene predicted gene 43059
D5Mit350 5 31482042 to 31482156 114 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 350
Tssr45710 5 31485858 to 31485865 7 + TSS region transcription start site region 45710
4930548H24Rik 5 31485859 to 31488262 2403 + protein coding gene RIKEN cDNA 4930548H24 gene
Tssr45711 5 31485881 to 31485891 10 + TSS region transcription start site region 45711
4930566F21Rik 5 31486629 to 31495179 8550 - antisense lncRNA gene RIKEN cDNA 4930566F21 gene
Tssr50549 5 31489106 to 31489154 48 - TSS region transcription start site region 50549
Cpgi15713 5 31494474 to 31495354 880 CpG island CpG island 15713
Tssr45712 5 31494736 to 31494778 42 + TSS region transcription start site region 45712
Gpn1 5 31494752 to 31511631 16879 + protein coding gene GPN-loop GTPase 1
Tssr1449 5 31494799 to 31494807 8 + TSS region transcription start site region 1449
Supt7l 5 31514569 to 31526762 12193 - protein coding gene suppressor of Ty 7-like
Tssr50550 5 31520709 to 31520739 30 - TSS region transcription start site region 50550
Tssr50551 5 31526666 to 31526684 18 - TSS region transcription start site region 50551
Tssr50552 5 31526693 to 31526747 54 - TSS region transcription start site region 50552
Cpgi15714 5 31526797 to 31527660 863 CpG island CpG island 15714
Tssr45713 5 31526989 to 31527034 45 + TSS region transcription start site region 45713
Slc4a1ap 5 31526995 to 31556932 29937 + protein coding gene solute carrier family 4 (anion exchanger), member 1, adaptor protein
Tssr45714 5 31527064 to 31527075 11 + TSS region transcription start site region 45714
Tssr45715 5 31527105 to 31527112 7 + TSS region transcription start site region 45715