Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:29374782-30009989

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lmbr1 5 29229802 to 29378390 148588 - protein coding gene limb region 1
Cpgi15662 5 29377716 to 29378912 1196 CpG island CpG island 15662
Tssr45531 5 29377774 to 29377810 36 + TSS region transcription start site region 45531
Tssr50461 5 29378319 to 29378335 16 - TSS region transcription start site region 50461
Tssr50462 5 29378337 to 29378401 64 - TSS region transcription start site region 50462
Tssr45532 5 29378604 to 29378607 3 + TSS region transcription start site region 45532
4632411P08Rik 5 29378699 to 29390488 11789 + lincRNA gene RIKEN cDNA 4632411P08 gene
Gm36086 5 29386860 to 29388302 1442 - lncRNA gene predicted gene, 36086
Cpgi15663 5 29434589 to 29435487 898 CpG island CpG island 15663
Nom1 5 29434659 to 29452169 17510 + protein coding gene nucleolar protein with MIF4G domain 1
Tssr45533 5 29434669 to 29434745 76 + TSS region transcription start site region 45533
Cpgi15664 5 29467644 to 29468342 698 CpG island CpG island 15664
Cpgi15665 5 29471188 to 29471450 262 CpG island CpG island 15665
Cpgi15666 5 29473816 to 29475033 1217 CpG island CpG island 15666
Mnx1 5 29473823 to 29478470 4647 - protein coding gene motor neuron and pancreas homeobox 1
Cpgi15667 5 29477397 to 29479016 1619 CpG island CpG island 15667
Tssr50463 5 29478578 to 29478597 19 - TSS region transcription start site region 50463
Tssr50464 5 29478630 to 29478638 8 - TSS region transcription start site region 50464
Gm24538 5 29481525 to 29481631 106 - snRNA gene predicted gene, 24538
Cpgi15668 5 29485494 to 29486048 554 CpG island CpG island 15668
D5Jcs63 5 29524175 to 29524318 143 DNA segment DNA segment, Chr 5, John C. Schimenti 63
Tssr45534 5 29538089 to 29538095 6 + TSS region transcription start site region 45534
Gm6083 5 29538153 to 29538509 356 + pseudogene predicted gene 6083
Cpgi15669 5 29568831 to 29570067 1236 CpG island CpG island 15669
Tssr45535 5 29569208 to 29569267 59 + TSS region transcription start site region 45535
Ube3c 5 29569242 to 29676077 106835 + protein coding gene ubiquitin protein ligase E3C
Tssr45536 5 29569342 to 29569354 12 + TSS region transcription start site region 45536
Tssr45537 5 29569438 to 29569448 10 + TSS region transcription start site region 45537
Tssr45538 5 29569449 to 29569459 10 + TSS region transcription start site region 45538
Tssr45539 5 29569463 to 29569481 18 + TSS region transcription start site region 45539
Tssr45540 5 29569490 to 29569499 9 + TSS region transcription start site region 45540
Tssr45541 5 29569820 to 29569830 10 + TSS region transcription start site region 45541
Tssr45542 5 29569838 to 29569853 15 + TSS region transcription start site region 45542
Tssr45543 5 29587566 to 29587567 1 + TSS region transcription start site region 45543
Tssr50465 5 29609905 to 29609911 6 - TSS region transcription start site region 50465
Tssr1441 5 29636696 to 29636708 12 + TSS region transcription start site region 1441
Tssr45544 5 29658999 to 29659002 3 + TSS region transcription start site region 45544
Tssr45545 5 29676528 to 29676532 4 + TSS region transcription start site region 45545
Gm42245 5 29684782 to 29699989 15207 - lncRNA gene predicted gene, 42245
Gm42570 5 29691422 to 29691713 291 + pseudogene predicted gene 42570
D5Jcs64 5 29693269 to 29693426 157 DNA segment DNA segment, Chr 5, John C. Schimenti 64
Gm26346 5 29709634 to 29709962 328 + unclassified non-coding RNA gene predicted gene, 26346
Gm43117 5 29719328 to 29719706 378 - pseudogene predicted gene 43117
Cpgi15670 5 29735513 to 29736656 1143 CpG island CpG island 15670
Gm5129 5 29735637 to 29735936 299 - unclassified gene predicted gene 5129
Dnajb6 5 29735693 to 29786478 50785 + protein coding gene DnaJ heat shock protein family (Hsp40) member B6
Tssr45546 5 29735725 to 29735737 12 + TSS region transcription start site region 45546
Tssr45547 5 29735739 to 29735751 12 + TSS region transcription start site region 45547
Tssr45548 5 29735822 to 29735831 9 + TSS region transcription start site region 45548
Tssr45549 5 29735837 to 29735850 13 + TSS region transcription start site region 45549
Tssr50466 5 29735883 to 29735893 10 - TSS region transcription start site region 50466
Tssr50467 5 29735902 to 29735925 23 - TSS region transcription start site region 50467
Tssr50468 5 29735928 to 29735945 17 - TSS region transcription start site region 50468
Tssr45550 5 29735967 to 29735989 22 + TSS region transcription start site region 45550
Tssr45551 5 29735991 to 29736011 20 + TSS region transcription start site region 45551
Tssr45552 5 29736112 to 29736140 28 + TSS region transcription start site region 45552
Tssr50469 5 29736412 to 29736428 16 - TSS region transcription start site region 50469
Tssr45553 5 29736451 to 29736460 9 + TSS region transcription start site region 45553
C130031E09Rik 5 29787687 to 29789384 1697 unclassified gene RIKEN cDNA C130031E09 gene
Gm5552 5 29794523 to 29795037 514 - pseudogene predicted gene 5552
Tssr50470 5 29795214 to 29795220 6 - TSS region transcription start site region 50470
Gm2213 5 29807471 to 29808158 687 - pseudogene predicted gene 2213
Gm1969 5 29832088 to 29833307 1219 - pseudogene predicted gene 1969
D5Jcs65 5 29863795 to 29863944 149 DNA segment DNA segment, Chr 5, John C. Schimenti 65
Gm42450 5 29886728 to 29891964 5236 - lincRNA gene predicted gene 42450
Tssr45554 5 29936387 to 29936395 8 + TSS region transcription start site region 45554
Gm43386 5 29946718 to 29950718 4000 - unclassified gene predicted gene 43386
Gm10469 5 29946719 to 29950717 3998 protein coding gene predicted gene 10469
A230098N10Rik 5 29996141 to 30008798 12657 - lincRNA gene RIKEN cDNA A230098N10 gene
Tssr50471 5 30008836 to 30008845 9 - TSS region transcription start site region 50471