Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:28155656-29543429

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15646 5 28157899 to 28158623 724 CpG island CpG island 15646
Cpgi15647 5 28159124 to 28159516 392 CpG island CpG island 15647
Cpgi15648 5 28161739 to 28162489 750 CpG island CpG island 15648
Cpgi15649 5 28165038 to 28167342 2304 CpG island CpG island 15649
Tssr45514 5 28165359 to 28165370 11 + TSS region transcription start site region 45514
Tssr50436 5 28165463 to 28165474 11 - TSS region transcription start site region 50436
Tssr45515 5 28165690 to 28165717 27 + TSS region transcription start site region 45515
En2 5 28165696 to 28172166 6470 + protein coding gene engrailed 2
Mym 5 28168475 to 28168839 364 unclassified gene myocyte maintenance
Gm43610 5 28168476 to 28168840 364 - unclassified gene predicted gene 43610
Cpgi15650 5 28168601 to 28169165 564 CpG island CpG island 15650
Cpgi15651 5 28170331 to 28170496 165 CpG island CpG island 15651
Cpgi15652 5 28170952 to 28171321 369 CpG island CpG island 15652
Cpgi15653 5 28175374 to 28175551 177 CpG island CpG island 15653
Gm42242 5 28178207 to 28187954 9747 + lncRNA gene predicted gene, 42242
Gm35395 5 28189566 to 28200736 11170 + lncRNA gene predicted gene, 35395
Cnpy1 5 28200819 to 28245788 44969 - protein coding gene canopy FGF signaling regulator 1
Cpgi15654 5 28209265 to 28210478 1213 CpG island CpG island 15654
Tssr50437 5 28209747 to 28209764 17 - TSS region transcription start site region 50437
Tssr50438 5 28209818 to 28209829 11 - TSS region transcription start site region 50438
Tssr50439 5 28209843 to 28209862 19 - TSS region transcription start site region 50439
Tssr50440 5 28209904 to 28209914 10 - TSS region transcription start site region 50440
Tssr50441 5 28209916 to 28209935 19 - TSS region transcription start site region 50441
Tssr50442 5 28209961 to 28209979 18 - TSS region transcription start site region 50442
Tssr50443 5 28210031 to 28210034 3 - TSS region transcription start site region 50443
Tssr50444 5 28210047 to 28210055 8 - TSS region transcription start site region 50444
Tssr50445 5 28210067 to 28210082 15 - TSS region transcription start site region 50445
Tssr50446 5 28210087 to 28210100 13 - TSS region transcription start site region 50446
Tssr45516 5 28210122 to 28210133 11 + TSS region transcription start site region 45516
Tssr50447 5 28210170 to 28210179 9 - TSS region transcription start site region 50447
Tssr50448 5 28210392 to 28210396 4 - TSS region transcription start site region 50448
Tssr50449 5 28210398 to 28210405 7 - TSS region transcription start site region 50449
Tssr50450 5 28210414 to 28210428 14 - TSS region transcription start site region 50450
Tssr50451 5 28237879 to 28237888 9 - TSS region transcription start site region 50451
Gm35524 5 28289690 to 28293353 3663 - lncRNA gene predicted gene, 35524
Gm35602 5 28297370 to 28316726 19356 - lncRNA gene predicted gene, 35602
Cpgi15655 5 28316502 to 28317748 1246 CpG island CpG island 15655
Tssr45517 5 28316844 to 28316920 76 + TSS region transcription start site region 45517
Tssr45518 5 28316928 to 28317008 80 + TSS region transcription start site region 45518
Rbm33 5 28317121 to 28419239 102118 + protein coding gene RNA binding motif protein 33
Tssr45519 5 28317153 to 28317220 67 + TSS region transcription start site region 45519
Tssr45520 5 28317886 to 28317890 4 + TSS region transcription start site region 45520
B930032E21Rik 5 28322471 to 28327016 4545 unclassified gene RIKEN cDNA B930032E21 gene
Tssr45521 5 28324442 to 28324446 4 + TSS region transcription start site region 45521
Tssr45522 5 28354848 to 28354853 5 + TSS region transcription start site region 45522
Tssr45523 5 28368240 to 28368284 44 + TSS region transcription start site region 45523
Tssr45524 5 28373088 to 28373092 4 + TSS region transcription start site region 45524
Tssr50452 5 28413813 to 28413821 8 - TSS region transcription start site region 50452
Shh 5 28456840 to 28467101 10261 - protein coding gene sonic hedgehog
Cpgi15656 5 28457770 to 28459390 1620 CpG island CpG island 15656
Tssr50453 5 28458842 to 28458854 12 - TSS region transcription start site region 50453
Tssr50454 5 28458896 to 28458910 14 - TSS region transcription start site region 50454
Tssr50455 5 28458942 to 28458958 16 - TSS region transcription start site region 50455
Cpgi15657 5 28459848 to 28460246 398 CpG island CpG island 15657
Cpgi15658 5 28462871 to 28463414 543 CpG island CpG island 15658
Cpgi15659 5 28463720 to 28465870 2150 CpG island CpG island 15659
Gm26894 5 28466374 to 28480973 14599 + lincRNA gene predicted gene, 26894
Cpgi15660 5 28466603 to 28467145 542 CpG island CpG island 15660
9530036O11Rik 5 28466984 to 28719209 252225 + antisense lncRNA gene RIKEN cDNA 9530036O11Rik
Tssr50456 5 28467044 to 28467050 6 - TSS region transcription start site region 50456
Tssr50457 5 28467093 to 28467109 16 - TSS region transcription start site region 50457
Gm10290 5 28538570 to 28539568 998 + pseudogene predicted pseudogene 10290
Gm43161 5 28577273 to 28578960 1687 + unclassified gene predicted gene 43161
Gm42243 5 28840656 to 28858429 17773 + lncRNA gene predicted gene, 42243
D5Mit195 5 28875393 to 28875495 102 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 195
Gm35688 5 28890378 to 29004724 114346 - lncRNA gene predicted gene, 35688
Tssr45525 5 28914032 to 28914034 2 + TSS region transcription start site region 45525
Gm35881 5 29008447 to 29010527 2080 + lncRNA gene predicted gene, 35881
Rnf32 5 29195185 to 29227635 32450 + protein coding gene ring finger protein 32
Cpgi15661 5 29195380 to 29196502 1122 CpG island CpG island 15661
Tssr50458 5 29195795 to 29195827 32 - TSS region transcription start site region 50458
Tssr45526 5 29195983 to 29196032 49 + TSS region transcription start site region 45526
Tssr45527 5 29196033 to 29196063 30 + TSS region transcription start site region 45527
Tssr45528 5 29196070 to 29196085 15 + TSS region transcription start site region 45528
Tssr45529 5 29196101 to 29196123 22 + TSS region transcription start site region 45529
Gm7420 5 29217724 to 29218565 841 + pseudogene predicted gene 7420
Tssr45530 5 29223948 to 29223949 1 + TSS region transcription start site region 45530
4921534E14Rik 5 29226289 to 29228456 2167 unclassified gene RIKEN cDNA 4921534E14 gene
Lmbr1 5 29229802 to 29378390 148588 - protein coding gene limb region 1
Gm42244 5 29271762 to 29274134 2372 - lncRNA gene predicted gene, 42244
C79130 5 29276002 to 29280297 4295 - protein coding gene expressed sequence C79130
Gm23801 5 29336780 to 29336846 66 - miRNA gene predicted gene, 23801
Tssr50459 5 29365092 to 29365100 8 - TSS region transcription start site region 50459
Tssr50460 5 29365147 to 29365151 4 - TSS region transcription start site region 50460
D5Jcs62 5 29366546 to 29366696 150 DNA segment DNA segment, Chr 5, John C. Schimenti 62
Cpgi15662 5 29377716 to 29378912 1196 CpG island CpG island 15662
Tssr45531 5 29377774 to 29377810 36 + TSS region transcription start site region 45531
Tssr50461 5 29378319 to 29378335 16 - TSS region transcription start site region 50461
Tssr50462 5 29378337 to 29378401 64 - TSS region transcription start site region 50462
Tssr45532 5 29378604 to 29378607 3 + TSS region transcription start site region 45532
4632411P08Rik 5 29378699 to 29390488 11789 + lincRNA gene RIKEN cDNA 4632411P08 gene
Gm36086 5 29386860 to 29388302 1442 - lncRNA gene predicted gene, 36086
Cpgi15663 5 29434589 to 29435487 898 CpG island CpG island 15663
Nom1 5 29434659 to 29452169 17510 + protein coding gene nucleolar protein with MIF4G domain 1
Tssr45533 5 29434669 to 29434745 76 + TSS region transcription start site region 45533
Cpgi15664 5 29467644 to 29468342 698 CpG island CpG island 15664
Cpgi15665 5 29471188 to 29471450 262 CpG island CpG island 15665
Cpgi15666 5 29473816 to 29475033 1217 CpG island CpG island 15666
Mnx1 5 29473823 to 29478470 4647 - protein coding gene motor neuron and pancreas homeobox 1
Cpgi15667 5 29477397 to 29479016 1619 CpG island CpG island 15667
Tssr50463 5 29478578 to 29478597 19 - TSS region transcription start site region 50463
Tssr50464 5 29478630 to 29478638 8 - TSS region transcription start site region 50464
Gm24538 5 29481525 to 29481631 106 - snRNA gene predicted gene, 24538
Cpgi15668 5 29485494 to 29486048 554 CpG island CpG island 15668
D5Jcs63 5 29524175 to 29524318 143 DNA segment DNA segment, Chr 5, John C. Schimenti 63
Tssr45534 5 29538089 to 29538095 6 + TSS region transcription start site region 45534
Gm6083 5 29538153 to 29538509 356 + pseudogene predicted gene 6083