Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:27839998-28161306

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi15640 5 27841656 to 27842090 434 CpG island CpG island 15640
Htr5a 5 27842149 to 27855088 12939 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641 5 27842519 to 27843161 642 CpG island CpG island 15641
Gm43096 5 27860018 to 27860438 420 - pseudogene predicted gene 43096
Gm5551 5 27860449 to 27861138 689 + pseudogene predicted gene 5551
Cpgi15642 5 27890323 to 27890618 295 CpG island CpG island 15642
Tssr50430 5 27919264 to 27919287 23 - TSS region transcription start site region 50430
Gm17695 5 27951975 to 27977335 25360 + protein coding gene predicted gene, 17695
Tssr45507 5 27952007 to 27952050 43 + TSS region transcription start site region 45507
Tssr45508 5 27994468 to 27994474 6 + TSS region transcription start site region 45508
Gm4865 5 27999998 to 28001306 1308 - pseudogene predicted gene 4865
Gm35223 5 28005942 to 28123931 117989 - lncRNA gene predicted gene, 35223
D5Jcs75 5 28017638 to 28017789 151 DNA segment DNA segment, Chr 5, John C. Schimenti 75
Gm43611 5 28032055 to 28036406 4351 - unclassified gene predicted gene 43611
Tssr45509 5 28032093 to 28032111 18 + TSS region transcription start site region 45509
Tssr45510 5 28032895 to 28032924 29 + TSS region transcription start site region 45510
Gm26608 5 28054947 to 28056032 1085 - lincRNA gene predicted gene, 26608
Tssr50431 5 28055440 to 28055464 24 - TSS region transcription start site region 50431
Cpgi15643 5 28070689 to 28072148 1459 CpG island CpG island 15643
Tssr45511 5 28071356 to 28071372 16 + TSS region transcription start site region 45511
Insig1 5 28071412 to 28078662 7250 + protein coding gene insulin induced gene 1
Tssr45512 5 28078078 to 28078089 11 + TSS region transcription start site region 45512
Gm35055 5 28116779 to 28121652 4873 + lncRNA gene predicted gene, 35055
Cpgi15644 5 28118013 to 28118855 842 CpG island CpG island 15644
Cpgi15645 5 28123130 to 28123343 213 CpG island CpG island 15645
Tssr50432 5 28123648 to 28123660 12 - TSS region transcription start site region 50432
Tssr50433 5 28123706 to 28123718 12 - TSS region transcription start site region 50433
Tssr50434 5 28124038 to 28124046 8 - TSS region transcription start site region 50434
Tssr50435 5 28124051 to 28124064 13 - TSS region transcription start site region 50435
Tssr45513 5 28124562 to 28124573 11 + TSS region transcription start site region 45513
Cpgi15646 5 28157899 to 28158623 724 CpG island CpG island 15646
Cpgi15647 5 28159124 to 28159516 392 CpG island CpG island 15647