Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:27412490-28222970

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dpp6 5 26817357 to 27727500 910143 + protein coding gene dipeptidylpeptidase 6
D5Jcs73 5 27484699 to 27484849 150 DNA segment DNA segment, Chr 5, John C. Schimenti 73
Speer4b 5 27495809 to 27501392 5583 - protein coding gene spermatogenesis associated glutamate (E)-rich protein 4B
Tssr1440 5 27537847 to 27537881 34 + TSS region transcription start site region 1440
D5Jcs74 5 27540150 to 27540291 141 DNA segment DNA segment, Chr 5, John C. Schimenti 74
Gm16058 5 27552551 to 27553875 1324 - antisense lncRNA gene predicted gene 16058
Tssr45503 5 27598883 to 27598885 2 + TSS region transcription start site region 45503
Tssr45504 5 27709422 to 27709443 21 + TSS region transcription start site region 45504
D5Mit386 5 27722228 to 27722340 112 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 386
Paxip1 5 27740080 to 27791691 51611 - protein coding gene PAX interacting (with transcription-activation domain) protein 1
Tssr50425 5 27745575 to 27745581 6 - TSS region transcription start site region 50425
Cpgi15639 5 27790728 to 27792103 1375 CpG island CpG island 15639
Tssr50426 5 27791340 to 27791420 80 - TSS region transcription start site region 50426
Tssr50427 5 27791426 to 27791437 11 - TSS region transcription start site region 50427
Tssr50428 5 27791650 to 27791694 44 - TSS region transcription start site region 50428
Tssr45505 5 27791723 to 27791753 30 + TSS region transcription start site region 45505
Tssr45506 5 27791758 to 27791791 33 + TSS region transcription start site region 45506
Gm43433 5 27817490 to 27817970 480 + pseudogene predicted gene 43433
Tssr50429 5 27817826 to 27817827 1 - TSS region transcription start site region 50429
Gm20239 5 27820970 to 27821951 981 + pseudogene predicted gene, 20239
Cpgi15640 5 27841656 to 27842090 434 CpG island CpG island 15640
Htr5a 5 27842149 to 27855088 12939 + protein coding gene 5-hydroxytryptamine (serotonin) receptor 5A
Cpgi15641 5 27842519 to 27843161 642 CpG island CpG island 15641
Gm43096 5 27860018 to 27860438 420 - pseudogene predicted gene 43096
Gm5551 5 27860449 to 27861138 689 + pseudogene predicted gene 5551
Cpgi15642 5 27890323 to 27890618 295 CpG island CpG island 15642
Tssr50430 5 27919264 to 27919287 23 - TSS region transcription start site region 50430
Gm17695 5 27951975 to 27977335 25360 + protein coding gene predicted gene, 17695
Tssr45507 5 27952007 to 27952050 43 + TSS region transcription start site region 45507
Tssr45508 5 27994468 to 27994474 6 + TSS region transcription start site region 45508
Gm4865 5 27999998 to 28001306 1308 - pseudogene predicted gene 4865
Gm35223 5 28005942 to 28123931 117989 - lncRNA gene predicted gene, 35223
D5Jcs75 5 28017638 to 28017789 151 DNA segment DNA segment, Chr 5, John C. Schimenti 75
Gm43611 5 28032055 to 28036406 4351 - unclassified gene predicted gene 43611
Tssr45509 5 28032093 to 28032111 18 + TSS region transcription start site region 45509
Tssr45510 5 28032895 to 28032924 29 + TSS region transcription start site region 45510
Gm26608 5 28054947 to 28056032 1085 - lincRNA gene predicted gene, 26608
Tssr50431 5 28055440 to 28055464 24 - TSS region transcription start site region 50431
Cpgi15643 5 28070689 to 28072148 1459 CpG island CpG island 15643
Tssr45511 5 28071356 to 28071372 16 + TSS region transcription start site region 45511
Insig1 5 28071412 to 28078662 7250 + protein coding gene insulin induced gene 1
Tssr45512 5 28078078 to 28078089 11 + TSS region transcription start site region 45512
Gm35055 5 28116779 to 28121652 4873 + lncRNA gene predicted gene, 35055
Cpgi15644 5 28118013 to 28118855 842 CpG island CpG island 15644
Cpgi15645 5 28123130 to 28123343 213 CpG island CpG island 15645
Tssr50432 5 28123648 to 28123660 12 - TSS region transcription start site region 50432
Tssr50433 5 28123706 to 28123718 12 - TSS region transcription start site region 50433
Tssr50434 5 28124038 to 28124046 8 - TSS region transcription start site region 50434
Tssr50435 5 28124051 to 28124064 13 - TSS region transcription start site region 50435
Tssr45513 5 28124562 to 28124573 11 + TSS region transcription start site region 45513
Cpgi15646 5 28157899 to 28158623 724 CpG island CpG island 15646
Cpgi15647 5 28159124 to 28159516 392 CpG island CpG island 15647
Cpgi15648 5 28161739 to 28162489 750 CpG island CpG island 15648
Cpgi15649 5 28165038 to 28167342 2304 CpG island CpG island 15649
Tssr45514 5 28165359 to 28165370 11 + TSS region transcription start site region 45514
Tssr50436 5 28165463 to 28165474 11 - TSS region transcription start site region 50436
Tssr45515 5 28165690 to 28165717 27 + TSS region transcription start site region 45515
En2 5 28165696 to 28172166 6470 + protein coding gene engrailed 2
Mym 5 28168475 to 28168839 364 unclassified gene myocyte maintenance
Gm43610 5 28168476 to 28168840 364 - unclassified gene predicted gene 43610
Cpgi15650 5 28168601 to 28169165 564 CpG island CpG island 15650
Cpgi15651 5 28170331 to 28170496 165 CpG island CpG island 15651
Cpgi15652 5 28170952 to 28171321 369 CpG island CpG island 15652
Cpgi15653 5 28175374 to 28175551 177 CpG island CpG island 15653
Gm42242 5 28178207 to 28187954 9747 + lncRNA gene predicted gene, 42242
Gm35395 5 28189566 to 28200736 11170 + lncRNA gene predicted gene, 35395
Cnpy1 5 28200819 to 28245788 44969 - protein coding gene canopy FGF signaling regulator 1
Cpgi15654 5 28209265 to 28210478 1213 CpG island CpG island 15654
Tssr50437 5 28209747 to 28209764 17 - TSS region transcription start site region 50437
Tssr50438 5 28209818 to 28209829 11 - TSS region transcription start site region 50438
Tssr50439 5 28209843 to 28209862 19 - TSS region transcription start site region 50439
Tssr50440 5 28209904 to 28209914 10 - TSS region transcription start site region 50440
Tssr50441 5 28209916 to 28209935 19 - TSS region transcription start site region 50441
Tssr50442 5 28209961 to 28209979 18 - TSS region transcription start site region 50442
Tssr50443 5 28210031 to 28210034 3 - TSS region transcription start site region 50443
Tssr50444 5 28210047 to 28210055 8 - TSS region transcription start site region 50444
Tssr50445 5 28210067 to 28210082 15 - TSS region transcription start site region 50445
Tssr50446 5 28210087 to 28210100 13 - TSS region transcription start site region 50446
Tssr45516 5 28210122 to 28210133 11 + TSS region transcription start site region 45516
Tssr50447 5 28210170 to 28210179 9 - TSS region transcription start site region 50447
Tssr50448 5 28210392 to 28210396 4 - TSS region transcription start site region 50448
Tssr50449 5 28210398 to 28210405 7 - TSS region transcription start site region 50449
Tssr50450 5 28210414 to 28210428 14 - TSS region transcription start site region 50450