Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:24545494-24745500

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Iqca1l 5 24543434 to 24555469 12035 - protein coding gene IQ motif containing with AAA domain 1 like
Cpgi15609 5 24554448 to 24554707 259 CpG island CpG island 15609
Tssr50337 5 24555401 to 24555421 20 - TSS region transcription start site region 50337
Tssr50338 5 24555428 to 24555440 12 - TSS region transcription start site region 50338
Abcf2 5 24565345 to 24577467 12122 - protein coding gene ATP-binding cassette, sub-family F (GCN20), member 2
Cpgi15610 5 24576769 to 24578001 1232 CpG island CpG island 15610
Tssr50339 5 24577309 to 24577320 11 - TSS region transcription start site region 50339
Tssr50340 5 24577370 to 24577429 59 - TSS region transcription start site region 50340
Tssr50341 5 24577477 to 24577493 16 - TSS region transcription start site region 50341
Tssr45433 5 24577718 to 24577760 42 + TSS region transcription start site region 45433
Gm10221 5 24581554 to 24581862 308 - pseudogene predicted gene 10221
Cpgi15611 5 24586449 to 24587202 753 CpG island CpG island 15611
Tssr45434 5 24586707 to 24586718 11 + TSS region transcription start site region 45434
Tssr45435 5 24586721 to 24586794 73 + TSS region transcription start site region 45435
Chpf2 5 24586741 to 24594556 7815 + protein coding gene chondroitin polymerizing factor 2
Tssr45436 5 24586798 to 24586822 24 + TSS region transcription start site region 45436
Tssr45437 5 24587137 to 24587165 28 + TSS region transcription start site region 45437
Cpgi15612 5 24591200 to 24591907 707 CpG island CpG island 15612
Mir671 5 24592114 to 24592211 97 + miRNA gene microRNA 671
Smarcd3 5 24592622 to 24624456 31834 - protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
Cpgi15613 5 24598408 to 24599011 603 CpG island CpG island 15613
Tssr50342 5 24598634 to 24598654 20 - TSS region transcription start site region 50342
Tssr50343 5 24598722 to 24598766 44 - TSS region transcription start site region 50343
Tssr50344 5 24598904 to 24598918 14 - TSS region transcription start site region 50344
Tssr50345 5 24598919 to 24598929 10 - TSS region transcription start site region 50345
Tssr50346 5 24598933 to 24598955 22 - TSS region transcription start site region 50346
Cpgi15614 5 24601209 to 24602894 1685 CpG island CpG island 15614
Tssr50347 5 24601858 to 24601904 46 - TSS region transcription start site region 50347
Tssr50348 5 24601915 to 24601922 7 - TSS region transcription start site region 50348
Tssr50349 5 24601961 to 24602007 46 - TSS region transcription start site region 50349
Tssr50350 5 24602085 to 24602099 14 - TSS region transcription start site region 50350
Tssr50351 5 24602175 to 24602218 43 - TSS region transcription start site region 50351
Tssr50352 5 24602229 to 24602288 59 - TSS region transcription start site region 50352
Tssr50353 5 24603114 to 24603122 8 - TSS region transcription start site region 50353
Cpgi15615 5 24604218 to 24605266 1048 CpG island CpG island 15615
D5Mit180 5 24605715 to 24605857 142 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 180
Tssr50354 5 24606341 to 24606378 37 - TSS region transcription start site region 50354
Tssr50355 5 24622646 to 24622653 7 - TSS region transcription start site region 50355
Tssr50356 5 24622659 to 24622680 21 - TSS region transcription start site region 50356
Tssr50357 5 24623472 to 24623483 11 - TSS region transcription start site region 50357
Cpgi15616 5 24623915 to 24624705 790 CpG island CpG island 15616
Tssr50358 5 24624397 to 24624445 48 - TSS region transcription start site region 50358
Tssr45438 5 24645447 to 24645463 16 + TSS region transcription start site region 45438
1700022A21Rik 5 24645453 to 24648860 3407 + pseudogene RIKEN cDNA 1700022A21 gene
Tssr45439 5 24645465 to 24645470 5 + TSS region transcription start site region 45439
Tssr45440 5 24645482 to 24645483 1 + TSS region transcription start site region 45440
Tssr45441 5 24645494 to 24645500 6 + TSS region transcription start site region 45441
Tssr45442 5 24645501 to 24645506 5 + TSS region transcription start site region 45442
Tssr50359 5 24685352 to 24685389 37 - TSS region transcription start site region 50359
Tssr50360 5 24685414 to 24685439 25 - TSS region transcription start site region 50360
Cpgi15617 5 24685444 to 24686366 922 CpG island CpG island 15617
Nub1 5 24685815 to 24710378 24563 + protein coding gene negative regulator of ubiquitin-like proteins 1
Tssr45443 5 24685815 to 24685819 4 + TSS region transcription start site region 45443
Tssr45444 5 24685833 to 24685853 20 + TSS region transcription start site region 45444
Tssr45445 5 24685954 to 24686004 50 + TSS region transcription start site region 45445
Gm26648 5 24696902 to 24704690 7788 - antisense lncRNA gene predicted gene, 26648
Tssr45446 5 24697076 to 24697094 18 + TSS region transcription start site region 45446
Tssr50361 5 24704656 to 24704671 15 - TSS region transcription start site region 50361
Tssr45447 5 24709062 to 24709079 17 + TSS region transcription start site region 45447
Tssr45448 5 24709567 to 24709591 24 + TSS region transcription start site region 45448
Wdr86 5 24711738 to 24730727 18989 - protein coding gene WD repeat domain 86
Cpgi15618 5 24729885 to 24731174 1289 CpG island CpG island 15618
Tssr50362 5 24730611 to 24730622 11 - TSS region transcription start site region 50362
Tssr50363 5 24730635 to 24730655 20 - TSS region transcription start site region 50363
Gm42231 5 24730948 to 24740820 9872 + lncRNA gene predicted gene, 42231