Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:23858316-24378664

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm9534 5 23863248 to 23892647 29399 - pseudogene predicted gene 9534
Tssr50297 5 23871360 to 23871365 5 - TSS region transcription start site region 50297
D5Jcs55 5 23894739 to 23894881 142 DNA segment DNA segment, Chr 5, John C. Schimenti 55
Fam126a 5 23915276 to 24030690 115414 - protein coding gene family with sequence similarity 126, member A
Tssr50298 5 23922660 to 23922694 34 - TSS region transcription start site region 50298
Tssr50299 5 23922914 to 23922929 15 - TSS region transcription start site region 50299
Gm6745 5 24009887 to 24010412 525 - pseudogene predicted gene 6745
Cpgi15588 5 24029681 to 24030939 1258 CpG island CpG island 15588
Tssr50300 5 24030297 to 24030319 22 - TSS region transcription start site region 50300
Tssr50301 5 24030626 to 24030646 20 - TSS region transcription start site region 50301
Tssr50302 5 24030649 to 24030707 58 - TSS region transcription start site region 50302
D5Mit381 5 24031043 to 24031192 149 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-381
Gm18038 5 24085244 to 24085728 484 + pseudogene predicted gene, 18038
Cpgi15589 5 24100365 to 24101322 957 CpG island CpG island 15589
Tssr50303 5 24100467 to 24100485 18 - TSS region transcription start site region 50303
Tssr45399 5 24100578 to 24100669 91 + TSS region transcription start site region 45399
Klhl7 5 24100605 to 24160792 60187 + protein coding gene kelch-like 7
Tssr45400 5 24100695 to 24100698 3 + TSS region transcription start site region 45400
Tssr45401 5 24105010 to 24105015 5 + TSS region transcription start site region 45401
Gm3724 5 24118316 to 24118664 348 - pseudogene predicted gene 3724
Tssr45402 5 24124828 to 24124834 6 + TSS region transcription start site region 45402
Tssr45403 5 24128146 to 24128151 5 + TSS region transcription start site region 45403
Gm43389 5 24153294 to 24155888 2594 + unclassified gene predicted gene 43389
Tssr45404 5 24159845 to 24159848 3 + TSS region transcription start site region 45404
Cpgi15590 5 24164803 to 24165375 572 CpG island CpG island 15590
Nupl2 5 24164963 to 24184013 19050 + protein coding gene nucleoporin like 2
Tssr45405 5 24164985 to 24165044 59 + TSS region transcription start site region 45405
Tssr45406 5 24165048 to 24165055 7 + TSS region transcription start site region 45406
Gm5575 5 24209327 to 24209724 397 - pseudogene predicted gene 5575
Gm43828 5 24232409 to 24233047 638 + pseudogene predicted gene 43828
D5Mit179.1 5 24233430 to 24233539 109 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179.1
D5Mit179 5 24233575 to 24233700 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 179
Gm43827 5 24240512 to 24241901 1389 + pseudogene predicted gene 43827
Tssr45407 5 24256707 to 24256728 21 + TSS region transcription start site region 45407
Gm9836 5 24256822 to 24257037 215 + pseudogene predicted pseudogene 9836
Tssr50304 5 24266715 to 24266752 37 - TSS region transcription start site region 50304
Gm33476 5 24301261 to 24306476 5215 + lncRNA gene predicted gene, 33476
Kcnh2 5 24319589 to 24351604 32015 - protein coding gene potassium voltage-gated channel, subfamily H (eag-related), member 2
Cpgi15591 5 24324975 to 24325965 990 CpG island CpG island 15591
Tssr50305 5 24329271 to 24329283 12 - TSS region transcription start site region 50305
Tssr50306 5 24329556 to 24329598 42 - TSS region transcription start site region 50306
Cpgi15592 5 24329562 to 24329717 155 CpG island CpG island 15592
Gm15589 5 24333923 to 24337216 3293 + antisense lncRNA gene predicted gene 15589
Tssr50307 5 24344529 to 24344544 15 - TSS region transcription start site region 50307
Tssr50308 5 24344550 to 24344567 17 - TSS region transcription start site region 50308
Tssr50309 5 24344572 to 24344586 14 - TSS region transcription start site region 50309
Cpgi15593 5 24347800 to 24349068 1268 CpG island CpG island 15593
Cpgi15594 5 24350863 to 24352483 1620 CpG island CpG island 15594
Tssr50310 5 24351072 to 24351116 44 - TSS region transcription start site region 50310
Tssr50311 5 24351628 to 24351647 19 - TSS region transcription start site region 50311
Tssr50312 5 24351657 to 24351702 45 - TSS region transcription start site region 50312
Tssr45408 5 24364804 to 24364824 20 + TSS region transcription start site region 45408
Nos3 5 24364819 to 24384474 19655 + protein coding gene nitric oxide synthase 3, endothelial cell
Gm15587 5 24366192 to 24383614 17422 - antisense lncRNA gene predicted gene 15587
D5Jcs56 5 24371083 to 24371236 153 DNA segment DNA segment, Chr 5, John C. Schimenti 56
Tssr50313 5 24373937 to 24373963 26 - TSS region transcription start site region 50313