Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143260025-143370110

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp316 5 143249697 to 143270022 20325 - protein coding gene zinc finger protein 316
Cpgi16977 5 143269054 to 143270456 1402 CpG island CpG island 16977
Tssr54361 5 143269958 to 143270018 60 - TSS region transcription start site region 54361
Tssr49642 5 143270044 to 143270084 40 + TSS region transcription start site region 49642
BC030343 5 143270075 to 143272513 2438 + lincRNA gene cDNA sequence BC030343
Zfp853 5 143287038 to 143293623 6585 - protein coding gene zinc finger protein 853
Cpgi16978 5 143287554 to 143288705 1151 CpG island CpG island 16978
Cpgi16979 5 143292583 to 143294120 1537 CpG island CpG island 16979
D5Mit100 5 143294871 to 143295033 162 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik 5 143301195 to 143315360 14165 - protein coding gene RIKEN cDNA E130309D02 gene
Cpgi16980 5 143314057 to 143314339 282 CpG island CpG island 16980
Cpgi16981 5 143314571 to 143315802 1231 CpG island CpG island 16981
Gm42501 5 143314839 to 143315864 1025 + unclassified gene predicted gene 42501
Tssr54362 5 143315025 to 143315110 85 - TSS region transcription start site region 54362
Tssr54363 5 143315266 to 143315291 25 - TSS region transcription start site region 54363
Tssr54364 5 143315294 to 143315311 17 - TSS region transcription start site region 54364
Tssr54365 5 143315315 to 143315358 43 - TSS region transcription start site region 54365
Tssr54366 5 143315360 to 143315396 36 - TSS region transcription start site region 54366
Zdhhc4 5 143316489 to 143329252 12763 - protein coding gene zinc finger, DHHC domain containing 4
Tssr54367 5 143320278 to 143320282 4 - TSS region transcription start site region 54367
Cpgi16982 5 143328632 to 143329464 832 CpG island CpG island 16982
Tssr54368 5 143329183 to 143329245 62 - TSS region transcription start site region 54368
Tssr49643 5 143329293 to 143329322 29 + TSS region transcription start site region 49643
0610040B10Rik 5 143329308 to 143332704 3396 + antisense lncRNA gene RIKEN cDNA 0610040B10 gene
Gm43397 5 143334635 to 143335425 790 + lincRNA gene predicted gene 43397
n-TSaga2 5 143347066 to 143347192 126 - tRNA gene nuclear encoded tRNA serine 2 (anticodon AGA)
D5Mit67 5 143349572 to 143349683 111 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 67
Tssr49644 5 143353703 to 143353710 7 + TSS region transcription start site region 49644
Grid2ip 5 143357338 to 143391798 34460 + protein coding gene glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
Cpgi16983 5 143357520 to 143358018 498 CpG island CpG island 16983
Tssr49645 5 143363890 to 143363919 29 + TSS region transcription start site region 49645
Cpgi16984 5 143364058 to 143364620 562 CpG island CpG island 16984
Cpgi16985 5 143369839 to 143370664 825 CpG island CpG island 16985
Tssr49646 5 143370061 to 143370079 18 + TSS region transcription start site region 49646
Tssr49647 5 143370104 to 143370118 14 + TSS region transcription start site region 49647