Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:143157718-143304748

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbakdn 5 143164779 to 143165751 972 - lincRNA gene RB-associated KRAB zinc finger downstream neighbor (non-protein coding)
Cpgi16973 5 143165427 to 143165956 529 CpG island CpG island 16973
Tssr54354 5 143165676 to 143165715 39 - TSS region transcription start site region 54354
Tssr54355 5 143165719 to 143165733 14 - TSS region transcription start site region 54355
Tssr54356 5 143165736 to 143165769 33 - TSS region transcription start site region 54356
Rbak 5 143172186 to 143180775 8589 - protein coding gene RB-associated KRAB zinc finger
Cpgi16974 5 143180304 to 143181022 718 CpG island CpG island 16974
Tssr54357 5 143180721 to 143180795 74 - TSS region transcription start site region 54357
Tssr54358 5 143180798 to 143180814 16 - TSS region transcription start site region 54358
Tssr49637 5 143180921 to 143180962 41 + TSS region transcription start site region 49637
Tssr49638 5 143181006 to 143181009 3 + TSS region transcription start site region 49638
Tssr49639 5 143181010 to 143181028 18 + TSS region transcription start site region 49639
Spdye4b 5 143181017 to 143205075 24058 + protein coding gene speedy/RINGO cell cycle regulator family, member E4B
Spdye4a 5 143216316 to 143226890 10574 - protein coding gene speedy/RINGO cell cycle regulator family, member E4A
Tssr54359 5 143225876 to 143225892 16 - TSS region transcription start site region 54359
4930448H16Rik 5 143227718 to 143234748 7030 + lincRNA gene RIKEN cDNA 4930448H16 gene
Gm38735 5 143228426 to 143235046 6620 - lncRNA gene predicted gene, 38735
Cpgi16975 5 143234939 to 143235944 1005 CpG island CpG island 16975
Tssr49640 5 143235143 to 143235251 108 + TSS region transcription start site region 49640
Zfp12 5 143235163 to 143248834 13671 + protein coding gene zinc finger protein 12
Tssr49641 5 143240384 to 143240392 8 + TSS region transcription start site region 49641
Tssr54360 5 143247627 to 143247633 6 - TSS region transcription start site region 54360
Zfp316 5 143249697 to 143270022 20325 - protein coding gene zinc finger protein 316
Cpgi16976 5 143252904 to 143255719 2815 CpG island CpG island 16976
Cpgi16977 5 143269054 to 143270456 1402 CpG island CpG island 16977
Tssr54361 5 143269958 to 143270018 60 - TSS region transcription start site region 54361
Tssr49642 5 143270044 to 143270084 40 + TSS region transcription start site region 49642
BC030343 5 143270075 to 143272513 2438 + lincRNA gene cDNA sequence BC030343
Zfp853 5 143287038 to 143293623 6585 - protein coding gene zinc finger protein 853
Cpgi16978 5 143287554 to 143288705 1151 CpG island CpG island 16978
Cpgi16979 5 143292583 to 143294120 1537 CpG island CpG island 16979
D5Mit100 5 143294871 to 143295033 162 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 100
E130309D02Rik 5 143301195 to 143315360 14165 - protein coding gene RIKEN cDNA E130309D02 gene