Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:140694885-141834983

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Elmaz2 5 125101165 to 141714711 16613546 QTL elevated maze behavior 2
Iqce 5 140662553 to 140702429 39876 - protein coding gene IQ motif containing E
Cpgi16929 5 140701566 to 140702450 884 CpG island CpG island 16929
Tssr54242 5 140702023 to 140702035 12 - TSS region transcription start site region 54242
Tssr54243 5 140702048 to 140702068 20 - TSS region transcription start site region 54243
Tssr54244 5 140702220 to 140702236 16 - TSS region transcription start site region 54244
Tssr54245 5 140702241 to 140702321 80 - TSS region transcription start site region 54245
Tssr49556 5 140702464 to 140702473 9 + TSS region transcription start site region 49556
Cpgi16930 5 140704416 to 140705499 1083 CpG island CpG island 16930
Tssr49557 5 140705006 to 140705037 31 + TSS region transcription start site region 49557
Brat1 5 140705011 to 140719379 14368 + protein coding gene BRCA1-associated ATM activator 1
Tssr49558 5 140705076 to 140705091 15 + TSS region transcription start site region 49558
Tssr49559 5 140705099 to 140705110 11 + TSS region transcription start site region 49559
Cpgi16931 5 140724038 to 140724245 207 CpG island CpG island 16931
Amz1 5 140724127 to 140753312 29185 + protein coding gene archaelysin family metallopeptidase 1
Cpgi16932 5 140735358 to 140735915 557 CpG island CpG island 16932
Tssr49560 5 140735531 to 140735548 17 + TSS region transcription start site region 49560
Tssr49561 5 140735556 to 140735567 11 + TSS region transcription start site region 49561
Gm30745 5 140748690 to 140750087 1397 - lncRNA gene predicted gene, 30745
D5Dcr26 5 140753316 to 140753418 102 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 26
Tssr54246 5 140759938 to 140759964 26 - TSS region transcription start site region 54246
Gna12 5 140759944 to 140830431 70487 - protein coding gene guanine nucleotide binding protein, alpha 12
Tssr54247 5 140760264 to 140760286 22 - TSS region transcription start site region 54247
Tssr54248 5 140760444 to 140760462 18 - TSS region transcription start site region 54248
Tssr54249 5 140760469 to 140760496 27 - TSS region transcription start site region 54249
Tssr54250 5 140760497 to 140760518 21 - TSS region transcription start site region 54250
Tssr54251 5 140760533 to 140760553 20 - TSS region transcription start site region 54251
Tssr49562 5 140767955 to 140767971 16 + TSS region transcription start site region 49562
Tssr54252 5 140773699 to 140773704 5 - TSS region transcription start site region 54252
D5Mit247 5 140800177 to 140800337 160 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 247
Tssr54253 5 140808522 to 140808527 5 - TSS region transcription start site region 54253
Tssr54254 5 140812083 to 140812086 3 - TSS region transcription start site region 54254
D5Mit327 5 140821714 to 140821812 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 327
Tssr54255 5 140826730 to 140826735 5 - TSS region transcription start site region 54255
Tssr54256 5 140826774 to 140826818 44 - TSS region transcription start site region 54256
Tssr54257 5 140826845 to 140826868 23 - TSS region transcription start site region 54257
Cpgi16933 5 140829691 to 140830910 1219 CpG island CpG island 16933
Tssr54258 5 140829759 to 140829771 12 - TSS region transcription start site region 54258
Tssr1730 5 140830154 to 140830192 38 - TSS region transcription start site region 1730
Tssr1731 5 140830265 to 140830273 8 - TSS region transcription start site region 1731
Tssr1732 5 140830311 to 140830321 10 - TSS region transcription start site region 1732
Tssr54259 5 140830337 to 140830348 11 - TSS region transcription start site region 54259
Tssr54260 5 140830363 to 140830384 21 - TSS region transcription start site region 54260
Tssr54261 5 140830403 to 140830425 22 - TSS region transcription start site region 54261
Tssr54262 5 140830430 to 140830453 23 - TSS region transcription start site region 54262
Tssr54263 5 140830455 to 140830467 12 - TSS region transcription start site region 54263
Tssr54264 5 140841969 to 140841985 16 - TSS region transcription start site region 54264
Gm30804 5 140852510 to 140880285 27775 + lncRNA gene predicted gene, 30804
Card11 5 140872990 to 141000582 127592 - protein coding gene caspase recruitment domain family, member 11
Cpgi16934 5 140873339 to 140873511 172 CpG island CpG island 16934
Cpgi16935 5 140889942 to 140890298 356 CpG island CpG island 16935
Cpgi16936 5 140906684 to 140906852 168 CpG island CpG island 16936
D5Dcr27 5 140908731 to 140908835 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 27
D5Dcr28 5 140920014 to 140920113 99 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 28
D5Dcr3 5 140922037 to 140922134 97 DNA segment DNA segment, Chr 5, Derry C. Roopenian 3
Tssr54265 5 140936140 to 140936141 1 - TSS region transcription start site region 54265
Cpgi16937 5 140944401 to 140944558 157 CpG island CpG island 16937
Tssr49563 5 140956551 to 140956572 21 + TSS region transcription start site region 49563
D5Mit99 5 140957413 to 140957611 198 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 99
D5Dcr4 5 140957425 to 140957526 101 DNA segment DNA segment, Chr 5, Derry C. Roopenian 4
Tssr54266 5 140965255 to 140965280 25 - TSS region transcription start site region 54266
Tssr54267 5 140992362 to 140992399 37 - TSS region transcription start site region 54267
D5Dcr29 5 140994339 to 140994443 104 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 29
Tssr54268 5 140995574 to 140995582 8 - TSS region transcription start site region 54268
Tssr54269 5 140995768 to 140995786 18 - TSS region transcription start site region 54269
Tssr54270 5 140995827 to 140995841 14 - TSS region transcription start site region 54270
Tssr54271 5 141000558 to 141000589 31 - TSS region transcription start site region 54271
Tssr54272 5 141000590 to 141000632 42 - TSS region transcription start site region 54272
Tssr54273 5 141000634 to 141000649 15 - TSS region transcription start site region 54273
Tssr54274 5 141000656 to 141000679 23 - TSS region transcription start site region 54274
Gm38729 5 141005001 to 141013486 8485 - lncRNA gene predicted gene, 38729
D5Dcr5 5 141022472 to 141022572 100 DNA segment DNA segment, Chr 5, Derry C. Roopenian 5
Gm44385 5 141029928 to 141030008 80 + miRNA gene predicted gene, 44385
Cpgi16938 5 141044300 to 141044484 184 CpG island CpG island 16938
Gm38730 5 141064235 to 141074685 10450 + lncRNA gene predicted gene, 38730
Gm26113 5 141080431 to 141080509 78 + miRNA gene predicted gene, 26113
Tssr49564 5 141116324 to 141116329 5 + TSS region transcription start site region 49564
Gm30866 5 141124859 to 141158981 34122 + lncRNA gene predicted gene, 30866
D5Mit380 5 141164308 to 141164427 119 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 380
D5Dcr30 5 141194598 to 141194693 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 30
D5Mit328 5 141211202 to 141211299 97 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 328
Tssr54275 5 141230296 to 141230300 4 - TSS region transcription start site region 54275
D5Dcr6 5 141238500 to 141238596 96 DNA segment DNA segment, Chr 5, Derry C. Roopenian 6
Cpgi16939 5 141240487 to 141242356 1869 CpG island CpG island 16939
Sdk1 5 141241497 to 142215586 974089 + protein coding gene sidekick cell adhesion molecule 1
Tssr49565 5 141241524 to 141241542 18 + TSS region transcription start site region 49565
Tssr49566 5 141241554 to 141241569 15 + TSS region transcription start site region 49566
Tssr49567 5 141241593 to 141241605 12 + TSS region transcription start site region 49567
Tssr49568 5 141241629 to 141241643 14 + TSS region transcription start site region 49568
Cpgi16940 5 141243428 to 141243725 297 CpG island CpG island 16940
D5Dcr31 5 141264885 to 141264983 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 31
Gm6433 5 141267581 to 141268455 874 - pseudogene predicted gene 6433
Tssr54276 5 141268480 to 141268481 1 - TSS region transcription start site region 54276
Gm43708 5 141297143 to 141298103 960 - unclassified gene predicted gene 43708
Gm43556 5 141307387 to 141308067 680 - unclassified gene predicted gene 43556
Gm43557 5 141315765 to 141318134 2369 - unclassified gene predicted gene 43557
Gm16035 5 141373179 to 141380926 7747 - antisense lncRNA gene predicted gene 16035
Tssr54277 5 141380928 to 141380947 19 - TSS region transcription start site region 54277
D5Dcr7 5 141457834 to 141457932 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 7
D5Dcr32 5 141553231 to 141553327 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 32
Gm24131 5 141566143 to 141566249 106 - snRNA gene predicted gene, 24131
D5Mit142 5 141572510 to 141572641 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 142
3200001G23Rik 5 141593881 to 141595077 1196 unclassified gene RIKEN cDNA 3200001G23 gene
Gm16036 5 141595985 to 141616002 20017 - antisense lncRNA gene predicted gene 16036
D5Dcr33 5 141619567 to 141619663 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 33
D5Mit101 5 141714580 to 141714711 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 101
Lbw3 5 141714580 to 141714711 131 QTL lupus NZB x NZW 3
D5Mit375 5 141793572 to 141793682 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 375