Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139559952-140064971

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16895 5 139585311 to 139585832 521 CpG island CpG island 16895
Cpgi16896 5 139599839 to 139600477 638 CpG island CpG island 16896
Cpgi16897 5 139610909 to 139611153 244 CpG island CpG island 16897
Cpgi16898 5 139619279 to 139620067 788 CpG island CpG island 16898
Cpgi16899 5 139659339 to 139659647 308 CpG island CpG island 16899
Gm46926 5 139660862 to 139669212 8350 - lncRNA gene predicted gene, 46926
Cpgi16900 5 139668487 to 139668912 425 CpG island CpG island 16900
Cpgi16901 5 139687820 to 139687976 156 CpG island CpG island 16901
Gm42424 5 139701647 to 139702022 375 + pseudogene predicted gene 42424
D5Dcr18 5 139702313 to 139702413 100 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 18
Micall2 5 139706696 to 139736336 29640 - protein coding gene MICAL-like 2
Tssr54170 5 139716416 to 139716427 11 - TSS region transcription start site region 54170
Tssr54171 5 139716495 to 139716524 29 - TSS region transcription start site region 54171
Tssr49523 5 139722931 to 139722941 10 + TSS region transcription start site region 49523
Tssr49524 5 139723290 to 139723304 14 + TSS region transcription start site region 49524
D5Dcr19 5 139726842 to 139726939 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 19
Cpgi16902 5 139732755 to 139732911 156 CpG island CpG island 16902
Cpgi16903 5 139735886 to 139736557 671 CpG island CpG island 16903
Tssr54172 5 139736266 to 139736287 21 - TSS region transcription start site region 54172
Tssr54173 5 139736291 to 139736332 41 - TSS region transcription start site region 54173
Tssr49525 5 139736797 to 139736803 6 + TSS region transcription start site region 49525
Ints1 5 139751282 to 139775674 24392 - protein coding gene integrator complex subunit 1
Cpgi16904 5 139754935 to 139755341 406 CpG island CpG island 16904
D5Dcr20 5 139766932 to 139767030 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 20
Mir7037 5 139767879 to 139767943 64 - miRNA gene microRNA 7037
Tssr54174 5 139771583 to 139771600 17 - TSS region transcription start site region 54174
Tssr54175 5 139771607 to 139771614 7 - TSS region transcription start site region 54175
Tssr54176 5 139774385 to 139774409 24 - TSS region transcription start site region 54176
Tssr54177 5 139774428 to 139774439 11 - TSS region transcription start site region 54177
Cpgi16905 5 139775131 to 139775857 726 CpG island CpG island 16905
Tssr54178 5 139775631 to 139775681 50 - TSS region transcription start site region 54178
Cpgi16906 5 139791071 to 139792271 1200 CpG island CpG island 16906
Tssr49526 5 139791508 to 139791517 9 + TSS region transcription start site region 49526
Tssr49527 5 139791522 to 139791539 17 + TSS region transcription start site region 49527
Mafk 5 139791536 to 139802653 11117 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
Tssr49528 5 139791556 to 139791601 45 + TSS region transcription start site region 49528
Tssr49529 5 139793994 to 139794005 11 + TSS region transcription start site region 49529
D5Dcr1 5 139794767 to 139794865 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 1
Tssr49530 5 139801012 to 139801017 5 + TSS region transcription start site region 49530
Tmem184a 5 139804952 to 139819971 15019 - protein coding gene transmembrane protein 184a
Cpgi16907 5 139807863 to 139808688 825 CpG island CpG island 16907
Gm26938 5 139807978 to 139826407 18429 - protein coding gene predicted gene, 26938
Tssr54179 5 139808501 to 139808525 24 - TSS region transcription start site region 54179
Tssr54180 5 139812995 to 139813006 11 - TSS region transcription start site region 54180
Cpgi16908 5 139813008 to 139813195 187 CpG island CpG island 16908
Tssr54181 5 139813208 to 139813220 12 - TSS region transcription start site region 54181
Tssr54182 5 139813237 to 139813250 13 - TSS region transcription start site region 54182
Tssr54183 5 139813994 to 139814014 20 - TSS region transcription start site region 54183
Tssr54184 5 139814025 to 139814062 37 - TSS region transcription start site region 54184
Tssr54185 5 139814198 to 139814229 31 - TSS region transcription start site region 54185
Tssr54186 5 139814231 to 139814279 48 - TSS region transcription start site region 54186
Tssr54187 5 139819906 to 139819932 26 - TSS region transcription start site region 54187
Tssr54188 5 139819933 to 139819973 40 - TSS region transcription start site region 54188
Tssr49531 5 139820091 to 139820102 11 + TSS region transcription start site region 49531
Gm46927 5 139821058 to 139833215 12157 + lncRNA gene predicted gene, 46927
Tssr49532 5 139822310 to 139822345 35 + TSS region transcription start site region 49532
Tssr49533 5 139822346 to 139822377 31 + TSS region transcription start site region 49533
Psmg3 5 139823592 to 139826885 3293 - protein coding gene proteasome (prosome, macropain) assembly chaperone 3
Cpgi16909 5 139826278 to 139827064 786 CpG island CpG island 16909
Tssr54189 5 139826837 to 139826891 54 - TSS region transcription start site region 54189
Gm38727 5 139836527 to 139838336 1809 + lncRNA gene predicted gene, 38727
Gm24146 5 139844930 to 139845250 320 + unclassified non-coding RNA gene predicted gene, 24146
Cpgi16910 5 139893964 to 139894126 162 CpG island CpG island 16910
Gm42423 5 139895809 to 139902734 6925 + lincRNA gene predicted gene 42423
Cpgi16911 5 139907130 to 139909427 2297 CpG island CpG island 16911
Elfn1 5 139907943 to 139974722 66779 + protein coding gene leucine rich repeat and fibronectin type III, extracellular 1
Tssr49534 5 139908412 to 139908424 12 + TSS region transcription start site region 49534
Cpgi16912 5 139910278 to 139910574 296 CpG island CpG island 16912
Cpgi16913 5 139911686 to 139913269 1583 CpG island CpG island 16913
Tssr49535 5 139912575 to 139912594 19 + TSS region transcription start site region 49535
D5Dcr2 5 139916996 to 139917103 107 DNA segment DNA segment, Chr 5, Derry C. Roopenian 2
Tssr1729 5 139924253 to 139924254 1 - TSS region transcription start site region 1729
Cpgi16914 5 139931981 to 139932155 174 CpG island CpG island 16914
Cpgi16915 5 139957069 to 139957243 174 CpG island CpG island 16915
Gm43704 5 139963296 to 139963791 495 - pseudogene predicted gene 43704
Cpgi16916 5 139972817 to 139973732 915 CpG island CpG island 16916
Cpgi16917 5 140002281 to 140002749 468 CpG island CpG island 16917
Mad1l1 5 140008689 to 140321552 312863 - protein coding gene MAD1 mitotic arrest deficient 1-like 1
Gm43702 5 140029631 to 140032176 2545 - unclassified gene predicted gene 43702
Tssr49536 5 140062461 to 140062468 7 + TSS region transcription start site region 49536