Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139481996-140352103

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfand2a 5 139471216 to 139484491 13275 - protein coding gene zinc finger, AN1-type domain 2A
Cpgi16884 5 139484077 to 139484777 700 CpG island CpG island 16884
Tssr54167 5 139484391 to 139484408 17 - TSS region transcription start site region 54167
Tssr54168 5 139484420 to 139484473 53 - TSS region transcription start site region 54168
Tssr54169 5 139484475 to 139484496 21 - TSS region transcription start site region 54169
Tssr49516 5 139484681 to 139484721 40 + TSS region transcription start site region 49516
4930500L23Rik 5 139523751 to 139541339 17588 + lincRNA gene RIKEN cDNA 4930500L23 gene
D5Mit284 5 139524691 to 139524893 202 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 284
Cpgi16885 5 139535369 to 139535830 461 CpG island CpG island 16885
Cpgi16886 5 139540259 to 139541752 1493 CpG island CpG island 16886
Cpgi16887 5 139543327 to 139545021 1694 CpG island CpG island 16887
Tssr49517 5 139543862 to 139543871 9 + TSS region transcription start site region 49517
Tssr49518 5 139543889 to 139543904 15 + TSS region transcription start site region 49518
Uncx 5 139543898 to 139548179 4281 + protein coding gene UNC homeobox
Tssr49519 5 139543911 to 139543932 21 + TSS region transcription start site region 49519
Cpgi16888 5 139546302 to 139547958 1656 CpG island CpG island 16888
Tssr1728 5 139547862 to 139547873 11 + TSS region transcription start site region 1728
Tssr49520 5 139547944 to 139547955 11 + TSS region transcription start site region 49520
Tssr49521 5 139547970 to 139547982 12 + TSS region transcription start site region 49521
Tssr49522 5 139547995 to 139548004 9 + TSS region transcription start site region 49522
Cpgi16889 5 139548345 to 139548948 603 CpG island CpG island 16889
Cpgi16890 5 139551423 to 139551662 239 CpG island CpG island 16890
Cpgi16891 5 139552705 to 139552881 176 CpG island CpG island 16891
Cpgi16892 5 139553164 to 139553624 460 CpG island CpG island 16892
Cpgi16893 5 139557552 to 139557964 412 CpG island CpG island 16893
Cpgi16894 5 139558553 to 139558729 176 CpG island CpG island 16894
Cpgi16895 5 139585311 to 139585832 521 CpG island CpG island 16895
Cpgi16896 5 139599839 to 139600477 638 CpG island CpG island 16896
Cpgi16897 5 139610909 to 139611153 244 CpG island CpG island 16897
Cpgi16898 5 139619279 to 139620067 788 CpG island CpG island 16898
Cpgi16899 5 139659339 to 139659647 308 CpG island CpG island 16899
Gm46926 5 139660862 to 139669212 8350 - lncRNA gene predicted gene, 46926
Cpgi16900 5 139668487 to 139668912 425 CpG island CpG island 16900
Cpgi16901 5 139687820 to 139687976 156 CpG island CpG island 16901
Gm42424 5 139701647 to 139702022 375 + pseudogene predicted gene 42424
D5Dcr18 5 139702313 to 139702413 100 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 18
Micall2 5 139706696 to 139736336 29640 - protein coding gene MICAL-like 2
Tssr54170 5 139716416 to 139716427 11 - TSS region transcription start site region 54170
Tssr54171 5 139716495 to 139716524 29 - TSS region transcription start site region 54171
Tssr49523 5 139722931 to 139722941 10 + TSS region transcription start site region 49523
Tssr49524 5 139723290 to 139723304 14 + TSS region transcription start site region 49524
D5Dcr19 5 139726842 to 139726939 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 19
Cpgi16902 5 139732755 to 139732911 156 CpG island CpG island 16902
Cpgi16903 5 139735886 to 139736557 671 CpG island CpG island 16903
Tssr54172 5 139736266 to 139736287 21 - TSS region transcription start site region 54172
Tssr54173 5 139736291 to 139736332 41 - TSS region transcription start site region 54173
Tssr49525 5 139736797 to 139736803 6 + TSS region transcription start site region 49525
Ints1 5 139751282 to 139775674 24392 - protein coding gene integrator complex subunit 1
Cpgi16904 5 139754935 to 139755341 406 CpG island CpG island 16904
D5Dcr20 5 139766932 to 139767030 98 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 20
Mir7037 5 139767879 to 139767943 64 - miRNA gene microRNA 7037
Tssr54174 5 139771583 to 139771600 17 - TSS region transcription start site region 54174
Tssr54175 5 139771607 to 139771614 7 - TSS region transcription start site region 54175
Tssr54176 5 139774385 to 139774409 24 - TSS region transcription start site region 54176
Tssr54177 5 139774428 to 139774439 11 - TSS region transcription start site region 54177
Cpgi16905 5 139775131 to 139775857 726 CpG island CpG island 16905
Tssr54178 5 139775631 to 139775681 50 - TSS region transcription start site region 54178
Cpgi16906 5 139791071 to 139792271 1200 CpG island CpG island 16906
Tssr49526 5 139791508 to 139791517 9 + TSS region transcription start site region 49526
Tssr49527 5 139791522 to 139791539 17 + TSS region transcription start site region 49527
Mafk 5 139791536 to 139802653 11117 + protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein K (avian)
Tssr49528 5 139791556 to 139791601 45 + TSS region transcription start site region 49528
Tssr49529 5 139793994 to 139794005 11 + TSS region transcription start site region 49529
D5Dcr1 5 139794767 to 139794865 98 DNA segment DNA segment, Chr 5, Derry C. Roopenian 1
Tssr49530 5 139801012 to 139801017 5 + TSS region transcription start site region 49530
Tmem184a 5 139804952 to 139819971 15019 - protein coding gene transmembrane protein 184a
Cpgi16907 5 139807863 to 139808688 825 CpG island CpG island 16907
Gm26938 5 139807978 to 139826407 18429 - protein coding gene predicted gene, 26938
Tssr54179 5 139808501 to 139808525 24 - TSS region transcription start site region 54179
Tssr54180 5 139812995 to 139813006 11 - TSS region transcription start site region 54180
Cpgi16908 5 139813008 to 139813195 187 CpG island CpG island 16908
Tssr54181 5 139813208 to 139813220 12 - TSS region transcription start site region 54181
Tssr54182 5 139813237 to 139813250 13 - TSS region transcription start site region 54182
Tssr54183 5 139813994 to 139814014 20 - TSS region transcription start site region 54183
Tssr54184 5 139814025 to 139814062 37 - TSS region transcription start site region 54184
Tssr54185 5 139814198 to 139814229 31 - TSS region transcription start site region 54185
Tssr54186 5 139814231 to 139814279 48 - TSS region transcription start site region 54186
Tssr54187 5 139819906 to 139819932 26 - TSS region transcription start site region 54187
Tssr54188 5 139819933 to 139819973 40 - TSS region transcription start site region 54188
Tssr49531 5 139820091 to 139820102 11 + TSS region transcription start site region 49531
Gm46927 5 139821058 to 139833215 12157 + lncRNA gene predicted gene, 46927
Tssr49532 5 139822310 to 139822345 35 + TSS region transcription start site region 49532
Tssr49533 5 139822346 to 139822377 31 + TSS region transcription start site region 49533
Psmg3 5 139823592 to 139826885 3293 - protein coding gene proteasome (prosome, macropain) assembly chaperone 3
Cpgi16909 5 139826278 to 139827064 786 CpG island CpG island 16909
Tssr54189 5 139826837 to 139826891 54 - TSS region transcription start site region 54189
Gm38727 5 139836527 to 139838336 1809 + lncRNA gene predicted gene, 38727
Gm24146 5 139844930 to 139845250 320 + unclassified non-coding RNA gene predicted gene, 24146
Cpgi16910 5 139893964 to 139894126 162 CpG island CpG island 16910
Gm42423 5 139895809 to 139902734 6925 + lincRNA gene predicted gene 42423
Cpgi16911 5 139907130 to 139909427 2297 CpG island CpG island 16911
Elfn1 5 139907943 to 139974722 66779 + protein coding gene leucine rich repeat and fibronectin type III, extracellular 1
Tssr49534 5 139908412 to 139908424 12 + TSS region transcription start site region 49534
Cpgi16912 5 139910278 to 139910574 296 CpG island CpG island 16912
Cpgi16913 5 139911686 to 139913269 1583 CpG island CpG island 16913
Tssr49535 5 139912575 to 139912594 19 + TSS region transcription start site region 49535
D5Dcr2 5 139916996 to 139917103 107 DNA segment DNA segment, Chr 5, Derry C. Roopenian 2
Tssr1729 5 139924253 to 139924254 1 - TSS region transcription start site region 1729
Cpgi16914 5 139931981 to 139932155 174 CpG island CpG island 16914
Cpgi16915 5 139957069 to 139957243 174 CpG island CpG island 16915
Gm43704 5 139963296 to 139963791 495 - pseudogene predicted gene 43704
Cpgi16916 5 139972817 to 139973732 915 CpG island CpG island 16916
Cpgi16917 5 140002281 to 140002749 468 CpG island CpG island 16917
Mad1l1 5 140008689 to 140321552 312863 - protein coding gene MAD1 mitotic arrest deficient 1-like 1
Gm43702 5 140029631 to 140032176 2545 - unclassified gene predicted gene 43702
Tssr49536 5 140062461 to 140062468 7 + TSS region transcription start site region 49536
Gm16122 5 140074105 to 140085512 11407 + antisense lncRNA gene predicted gene 16122
Gm30492 5 140094719 to 140100186 5467 + lncRNA gene predicted gene, 30492
Gm16121 5 140101199 to 140107591 6392 + antisense lncRNA gene predicted gene 16121
Tssr54190 5 140105824 to 140105852 28 - TSS region transcription start site region 54190
Tssr54191 5 140118040 to 140118056 16 - TSS region transcription start site region 54191
Tssr54192 5 140118060 to 140118069 9 - TSS region transcription start site region 54192
Gm43195 5 140149156 to 140151487 2331 - unclassified gene predicted gene 43195
Tssr54193 5 140174801 to 140174813 12 - TSS region transcription start site region 54193
Tssr54194 5 140201155 to 140201175 20 - TSS region transcription start site region 54194
Tssr54195 5 140206046 to 140206057 11 - TSS region transcription start site region 54195
Gm16120 5 140207385 to 140210751 3366 + antisense lncRNA gene predicted gene 16120
Tssr54196 5 140208728 to 140208747 19 - TSS region transcription start site region 54196
Cpgi16918 5 140208734 to 140209054 320 CpG island CpG island 16918
Tssr49537 5 140208831 to 140208850 19 + TSS region transcription start site region 49537
Tssr54197 5 140215428 to 140215437 9 - TSS region transcription start site region 54197
Tssr54198 5 140235447 to 140235453 6 - TSS region transcription start site region 54198
Tssr54199 5 140246836 to 140246838 2 - TSS region transcription start site region 54199
D5Dcr21 5 140259798 to 140259895 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 21
Tssr54200 5 140261517 to 140261547 30 - TSS region transcription start site region 54200
Tssr54201 5 140261561 to 140261570 9 - TSS region transcription start site region 54201
Tssr54202 5 140261571 to 140261587 16 - TSS region transcription start site region 54202
Tssr54203 5 140261692 to 140261716 24 - TSS region transcription start site region 54203
Tssr54204 5 140261778 to 140261789 11 - TSS region transcription start site region 54204
Tssr54205 5 140262525 to 140262534 9 - TSS region transcription start site region 54205
Tssr54206 5 140262555 to 140262579 24 - TSS region transcription start site region 54206
Tssr54207 5 140262596 to 140262601 5 - TSS region transcription start site region 54207
Tssr54208 5 140264323 to 140264328 5 - TSS region transcription start site region 54208
Tssr49538 5 140264377 to 140264398 21 + TSS region transcription start site region 49538
D5Dcr22 5 140288332 to 140288427 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 22
D5Dcr23 5 140305161 to 140305258 97 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 23
Cpgi16919 5 140321102 to 140321783 681 CpG island CpG island 16919
Tssr54209 5 140321524 to 140321585 61 - TSS region transcription start site region 54209
Tssr49539 5 140321614 to 140321671 57 + TSS region transcription start site region 49539
Gm43338 5 140321622 to 140323844 2222 - unclassified gene predicted gene 43338
Nudt1 5 140321656 to 140338137 16481 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 1
5730453C05Rik 5 140324738 to 140326055 1317 unclassified gene RIKEN cDNA 5730453C05 gene
Mrm2 5 140327674 to 140331898 4224 - protein coding gene mitochondrial rRNA methyltransferase 2
Cpgi16920 5 140331514 to 140332048 534 CpG island CpG island 16920
Tssr54210 5 140331873 to 140331897 24 - TSS region transcription start site region 54210
Tssr49540 5 140331898 to 140331939 41 + TSS region transcription start site region 49540
Snx8 5 140340298 to 140389247 48949 - protein coding gene sorting nexin 8
Tssr54211 5 140340466 to 140340473 7 - TSS region transcription start site region 54211