Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:139211876-139385464

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sun1 5 139200637 to 139249840 49203 + protein coding gene Sad1 and UNC84 domain containing 1
Tssr49492 5 139211934 to 139211948 14 + TSS region transcription start site region 49492
4930520M14Rik 5 139215469 to 139216356 887 - antisense lncRNA gene RIKEN cDNA 4930520M14 gene
Tssr54136 5 139216314 to 139216358 44 - TSS region transcription start site region 54136
Tssr49493 5 139217754 to 139217758 4 + TSS region transcription start site region 49493
Cpgi16876 5 139251808 to 139253178 1370 CpG island CpG island 16876
Tssr49494 5 139252314 to 139252329 15 + TSS region transcription start site region 49494
Get4 5 139252324 to 139270051 17727 + protein coding gene golgi to ER traffic protein 4
Tssr49495 5 139252343 to 139252455 112 + TSS region transcription start site region 49495
Tssr49496 5 139252722 to 139252787 65 + TSS region transcription start site region 49496
Tssr49497 5 139253489 to 139253519 30 + TSS region transcription start site region 49497
Tssr49498 5 139256632 to 139256636 4 + TSS region transcription start site region 49498
Adap1 5 139271876 to 139325464 53588 - protein coding gene ArfGAP with dual PH domains 1
Cpgi16877 5 139282240 to 139282488 248 CpG island CpG island 16877
Tssr54137 5 139306261 to 139306305 44 - TSS region transcription start site region 54137
Gm27316 5 139312424 to 139312700 276 + unclassified non-coding RNA gene predicted gene, 27316
Tssr54138 5 139316326 to 139316344 18 - TSS region transcription start site region 54138
Cpgi16878 5 139324578 to 139326134 1556 CpG island CpG island 16878
Tssr54139 5 139325373 to 139325405 32 - TSS region transcription start site region 54139
Tssr54140 5 139325443 to 139325488 45 - TSS region transcription start site region 54140
Tssr54141 5 139325490 to 139325568 78 - TSS region transcription start site region 54141
Tssr54142 5 139325616 to 139325627 11 - TSS region transcription start site region 54142
Tssr54143 5 139325697 to 139325752 55 - TSS region transcription start site region 54143
Tssr54144 5 139325757 to 139325768 11 - TSS region transcription start site region 54144
Tssr54145 5 139325771 to 139325772 1 - TSS region transcription start site region 54145
Cox19 5 139337822 to 139345166 7344 - protein coding gene cytochrome c oxidase assembly protein 19
Cpgi16879 5 139344930 to 139345404 474 CpG island CpG island 16879
Tssr54146 5 139345097 to 139345108 11 - TSS region transcription start site region 54146
Tssr54147 5 139345112 to 139345148 36 - TSS region transcription start site region 54147
Tssr54148 5 139345149 to 139345216 67 - TSS region transcription start site region 54148
Tssr49499 5 139352607 to 139352623 16 + TSS region transcription start site region 49499
Cyp2w1 5 139352617 to 139357033 4416 + protein coding gene cytochrome P450, family 2, subfamily w, polypeptide 1
Tssr49500 5 139354209 to 139354222 13 + TSS region transcription start site region 49500
Tssr49501 5 139354241 to 139354260 19 + TSS region transcription start site region 49501
3110082I17Rik 5 139359739 to 139460527 100788 - protein coding gene RIKEN cDNA 3110082I17 gene
Tssr49502 5 139364964 to 139364996 32 + TSS region transcription start site region 49502
Mir339 5 139369650 to 139369745 95 - miRNA gene microRNA 339
Cpgi16880 5 139371854 to 139372493 639 CpG island CpG island 16880
Tssr54149 5 139372177 to 139372201 24 - TSS region transcription start site region 54149
Tssr54150 5 139372213 to 139372242 29 - TSS region transcription start site region 54150
Tssr1727 5 139372243 to 139372256 13 - TSS region transcription start site region 1727
Tssr49503 5 139377688 to 139377710 22 + TSS region transcription start site region 49503
Gpr146 5 139377697 to 139396415 18718 + protein coding gene G protein-coupled receptor 146
Tssr49504 5 139377716 to 139377745 29 + TSS region transcription start site region 49504
Cpgi16881 5 139380119 to 139381188 1069 CpG island CpG island 16881
Tssr49505 5 139380632 to 139380707 75 + TSS region transcription start site region 49505
Tssr54151 5 139382276 to 139382326 50 - TSS region transcription start site region 54151
Tssr54152 5 139382894 to 139382908 14 - TSS region transcription start site region 54152
Tssr54153 5 139382920 to 139382949 29 - TSS region transcription start site region 54153