Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138999873-139259880

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hypch 5 109090758 to 139133150 30042392 QTL hypercholesterolemia
6330403L08Rik 5 138995056 to 139000577 5521 + antisense lncRNA gene RIKEN cDNA 6330403L08 gene
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Tssr54125 5 139018400 to 139018411 11 - TSS region transcription start site region 54125
Tssr54126 5 139024587 to 139024608 21 - TSS region transcription start site region 54126
Tssr54127 5 139039153 to 139039154 1 - TSS region transcription start site region 54127
Cpgi16873 5 139129173 to 139130246 1073 CpG island CpG island 16873
Tssr54128 5 139129662 to 139129752 90 - TSS region transcription start site region 54128
Tssr54129 5 139129873 to 139129880 7 - TSS region transcription start site region 54129
Tssr54130 5 139130002 to 139130011 9 - TSS region transcription start site region 54130
Tssr54131 5 139130016 to 139130042 26 - TSS region transcription start site region 54131
Tssr54132 5 139130044 to 139130063 19 - TSS region transcription start site region 54132
Tssr54133 5 139130076 to 139130079 3 - TSS region transcription start site region 54133
Tssr54134 5 139130170 to 139130181 11 - TSS region transcription start site region 54134
D5Mit374 5 139133034 to 139133150 116 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 374
9330169B04Rik 5 139135827 to 139139417 3590 unclassified gene RIKEN cDNA 9330169B04 gene
Gm15672 5 139147576 to 139150693 3117 - unclassified non-coding RNA gene predicted gene 15672
Cpgi16874 5 139149524 to 139151120 1596 CpG island CpG island 16874
Tssr49484 5 139150139 to 139150146 7 + TSS region transcription start site region 49484
Tssr49485 5 139150200 to 139150209 9 + TSS region transcription start site region 49485
Tssr49486 5 139150211 to 139150249 38 + TSS region transcription start site region 49486
Dnaaf5 5 139150223 to 139186505 36282 + protein coding gene dynein, axonemal assembly factor 5
Tssr54135 5 139150659 to 139150723 64 - TSS region transcription start site region 54135
Tssr49487 5 139150824 to 139150833 9 + TSS region transcription start site region 49487
Tssr49488 5 139161801 to 139161851 50 + TSS region transcription start site region 49488
Tssr49489 5 139161879 to 139161888 9 + TSS region transcription start site region 49489
Tssr49490 5 139167077 to 139167083 6 + TSS region transcription start site region 49490
D5Dcr16 5 139184955 to 139185067 112 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 16
Cpgi16875 5 139200155 to 139201409 1254 CpG island CpG island 16875
Tssr49491 5 139200631 to 139200678 47 + TSS region transcription start site region 49491
Sun1 5 139200637 to 139249840 49203 + protein coding gene Sad1 and UNC84 domain containing 1
Tssr49492 5 139211934 to 139211948 14 + TSS region transcription start site region 49492
4930520M14Rik 5 139215469 to 139216356 887 - antisense lncRNA gene RIKEN cDNA 4930520M14 gene
Tssr54136 5 139216314 to 139216358 44 - TSS region transcription start site region 54136
Tssr49493 5 139217754 to 139217758 4 + TSS region transcription start site region 49493
Cpgi16876 5 139251808 to 139253178 1370 CpG island CpG island 16876
Tssr49494 5 139252314 to 139252329 15 + TSS region transcription start site region 49494
Get4 5 139252324 to 139270051 17727 + protein coding gene golgi to ER traffic protein 4
Tssr49495 5 139252343 to 139252455 112 + TSS region transcription start site region 49495
Tssr49496 5 139252722 to 139252787 65 + TSS region transcription start site region 49496
Tssr49497 5 139253489 to 139253519 30 + TSS region transcription start site region 49497
Tssr49498 5 139256632 to 139256636 4 + TSS region transcription start site region 49498