MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:138977635-139017646

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17 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Pdgfa	5	138976381 to 138997686	21305	-	protein coding gene	platelet derived growth factor, alpha
Cpgi16871	5	138992864 to 138996563	3699		CpG island	CpG island 16871
Tssr54115	5	138993093 to 138993113	20	-	TSS region	transcription start site region 54115
Tssr54116	5	138994112 to 138994124	12	-	TSS region	transcription start site region 54116
Tssr54117	5	138994935 to 138994983	48	-	TSS region	transcription start site region 54117
Tssr49482	5	138995038 to 138995066	28	+	TSS region	transcription start site region 49482
6330403L08Rik	5	138995056 to 139000577	5521	+	antisense lncRNA gene	RIKEN cDNA 6330403L08 gene
Tssr54118	5	138995326 to 138995364	38	-	TSS region	transcription start site region 54118
Tssr54119	5	138995624 to 138995640	16	-	TSS region	transcription start site region 54119
Tssr54120	5	138996006 to 138996025	19	-	TSS region	transcription start site region 54120
Tssr54121	5	138996057 to 138996068	11	-	TSS region	transcription start site region 54121
Tssr54122	5	138996091 to 138996112	21	-	TSS region	transcription start site region 54122
Tssr49483	5	138996225 to 138996263	38	+	TSS region	transcription start site region 49483
Cpgi16872	5	138997101 to 138998571	1470		CpG island	CpG island 16872
Tssr54123	5	138997610 to 138997627	17	-	TSS region	transcription start site region 54123
Tssr54124	5	138997635 to 138997646	11	-	TSS region	transcription start site region 54124
Prkar1b	5	139017306 to 139150001	132695	-	protein coding gene	protein kinase, cAMP dependent regulatory, type I beta