Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138901057-139091068

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm31891 5 138863046 to 138910604 47558 + pseudogene predicted gene, 31891
Gm38726 5 138934588 to 138945163 10575 + lncRNA gene predicted gene, 38726
Pdgfa 5 138976381 to 138997686 21305 - protein coding gene platelet derived growth factor, alpha
Tssr54109 5 138976512 to 138976516 4 - TSS region transcription start site region 54109
Tssr49481 5 138976974 to 138977016 42 + TSS region transcription start site region 49481
Tssr54110 5 138977003 to 138977055 52 - TSS region transcription start site region 54110
Tssr54111 5 138977076 to 138977092 16 - TSS region transcription start site region 54111
Tssr54112 5 138977095 to 138977106 11 - TSS region transcription start site region 54112
Tssr54113 5 138977136 to 138977152 16 - TSS region transcription start site region 54113
Tssr54114 5 138977185 to 138977196 11 - TSS region transcription start site region 54114
Cpgi16871 5 138992864 to 138996563 3699 CpG island CpG island 16871
Tssr54115 5 138993093 to 138993113 20 - TSS region transcription start site region 54115
Tssr54116 5 138994112 to 138994124 12 - TSS region transcription start site region 54116
Tssr54117 5 138994935 to 138994983 48 - TSS region transcription start site region 54117
Tssr49482 5 138995038 to 138995066 28 + TSS region transcription start site region 49482
6330403L08Rik 5 138995056 to 139000577 5521 + antisense lncRNA gene RIKEN cDNA 6330403L08 gene
Tssr54118 5 138995326 to 138995364 38 - TSS region transcription start site region 54118
Tssr54119 5 138995624 to 138995640 16 - TSS region transcription start site region 54119
Tssr54120 5 138996006 to 138996025 19 - TSS region transcription start site region 54120
Tssr54121 5 138996057 to 138996068 11 - TSS region transcription start site region 54121
Tssr54122 5 138996091 to 138996112 21 - TSS region transcription start site region 54122
Tssr49483 5 138996225 to 138996263 38 + TSS region transcription start site region 49483
Cpgi16872 5 138997101 to 138998571 1470 CpG island CpG island 16872
Tssr54123 5 138997610 to 138997627 17 - TSS region transcription start site region 54123
Tssr54124 5 138997635 to 138997646 11 - TSS region transcription start site region 54124
Prkar1b 5 139017306 to 139150001 132695 - protein coding gene protein kinase, cAMP dependent regulatory, type I beta
Tssr54125 5 139018400 to 139018411 11 - TSS region transcription start site region 54125
Tssr54126 5 139024587 to 139024608 21 - TSS region transcription start site region 54126
Tssr54127 5 139039153 to 139039154 1 - TSS region transcription start site region 54127