Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138229260-138500552

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nxpe5 5 138225898 to 138253363 27465 + protein coding gene neurexophilin and PC-esterase domain family, member 5
Tssr49428 5 138229739 to 138229749 10 + TSS region transcription start site region 49428
Tssr49429 5 138229768 to 138229779 11 + TSS region transcription start site region 49429
Tssr49430 5 138229786 to 138229795 9 + TSS region transcription start site region 49430
Tssr49431 5 138229812 to 138229819 7 + TSS region transcription start site region 49431
Tssr49432 5 138229834 to 138229849 15 + TSS region transcription start site region 49432
Tssr49433 5 138229867 to 138229881 14 + TSS region transcription start site region 49433
Tssr1725 5 138231043 to 138231076 33 + TSS region transcription start site region 1725
Cpgi16859 5 138255480 to 138256019 539 CpG island CpG island 16859
Lamtor4 5 138255482 to 138259395 3913 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Tssr54090 5 138255542 to 138255600 58 - TSS region transcription start site region 54090
Tssr49434 5 138255714 to 138255725 11 + TSS region transcription start site region 49434
Tssr49435 5 138255727 to 138255788 61 + TSS region transcription start site region 49435
Tssr49436 5 138255855 to 138255866 11 + TSS region transcription start site region 49436
Tssr49437 5 138256067 to 138256123 56 + TSS region transcription start site region 49437
Tssr49438 5 138256124 to 138256135 11 + TSS region transcription start site region 49438
Map11 5 138259656 to 138264033 4377 - protein coding gene microtubule associated protein 11
Tssr49439 5 138262347 to 138262369 22 + TSS region transcription start site region 49439
Tssr49440 5 138262397 to 138262418 21 + TSS region transcription start site region 49440
Cpgi16860 5 138262899 to 138264149 1250 CpG island CpG island 16860
Tssr54091 5 138263117 to 138263133 16 - TSS region transcription start site region 54091
Tssr54092 5 138263942 to 138263988 46 - TSS region transcription start site region 54092
Tssr54093 5 138264013 to 138264060 47 - TSS region transcription start site region 54093
6330418K02Rik 5 138264045 to 138266661 2616 + antisense lncRNA gene RIKEN cDNA 6330418K02 gene
Tssr49441 5 138264057 to 138264097 40 + TSS region transcription start site region 49441
Tssr54094 5 138264122 to 138264147 25 - TSS region transcription start site region 54094
Gal3st4 5 138264921 to 138272840 7919 - protein coding gene galactose-3-O-sulfotransferase 4
Gm43720 5 138264952 to 138279958 15006 - protein coding gene predicted gene 43720
Tssr54095 5 138271504 to 138271519 15 - TSS region transcription start site region 54095
Tssr54096 5 138272733 to 138272743 10 - TSS region transcription start site region 54096
Tssr54097 5 138272786 to 138272817 31 - TSS region transcription start site region 54097
Gpc2 5 138273655 to 138280005 6350 - protein coding gene glypican 2 (cerebroglycan)
Cpgi16861 5 138275480 to 138276065 585 CpG island CpG island 16861
Cpgi16862 5 138279617 to 138280733 1116 CpG island CpG island 16862
Tssr54098 5 138279960 to 138280016 56 - TSS region transcription start site region 54098
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49442 5 138280337 to 138280355 18 + TSS region transcription start site region 49442
Tssr49443 5 138280492 to 138280504 12 + TSS region transcription start site region 49443
Tssr49444 5 138280516 to 138280537 21 + TSS region transcription start site region 49444
Tssr49445 5 138280538 to 138280563 25 + TSS region transcription start site region 49445
Tssr49446 5 138341923 to 138341936 13 + TSS region transcription start site region 49446
Tssr49447 5 138341941 to 138341975 34 + TSS region transcription start site region 49447
Pvrig 5 138341961 to 138343557 1596 + protein coding gene poliovirus receptor related immunoglobulin domain containing
Pvrig-ps 5 138359838 to 138360041 203 + pseudogene poliovirus receptor related immunoglobulin domain containing, pseudogene
Gm10874 5 138363719 to 138388287 24568 + lincRNA gene predicted gene 10874
Got2-ps1 5 138364260 to 138365552 1292 - pseudogene glutamatic-oxaloacetic transaminase 2, mitochondrial, pseudogene 1
Cpgi16863 5 138364680 to 138364903 223 CpG island CpG island 16863
Tssr54099 5 138365608 to 138365610 2 - TSS region transcription start site region 54099
Gm25525 5 138378591 to 138378697 106 + snRNA gene predicted gene, 25525
Cyp3a61-ps1 5 138383812 to 138391594 7782 - pseudogene cytochrome P450, family 3, subfamily a, member 61, pseudogene 1
Gm48029 5 138412594 to 138412913 319 - pseudogene predicted gene, 48029
Cpgi16864 5 138441343 to 138441966 623 CpG island CpG island 16864
Zfp157 5 138441468 to 138460694 19226 + protein coding gene zinc finger protein 157
Tssr49448 5 138441471 to 138441530 59 + TSS region transcription start site region 49448
Scram1 5 138457140 to 138457140 0 QTL spinal cord resistance to astrocytoma modifier 1
Rvfs3 5 138457140 to 26236236 -112220904 QTL Rift Valley fever susceptibility 3