Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:138001813-138341816

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29127 5 138017419 to 138017935 516 + pseudogene predicted gene 29127
Smok3a 5 138021276 to 138034665 13389 + protein coding gene sperm motility kinase 3A
Smok3b 5 138037224 to 138050633 13409 + protein coding gene sperm motility kinase 3B
Smok3c 5 138053194 to 138066537 13343 + protein coding gene sperm motility kinase 3C
Cpgi16852 5 138085015 to 138085674 659 CpG island CpG island 16852
Tssr49408 5 138085083 to 138085147 64 + TSS region transcription start site region 49408
Zkscan1 5 138085084 to 138107822 22738 + protein coding gene zinc finger with KRAB and SCAN domains 1
Tssr49409 5 138085173 to 138085182 9 + TSS region transcription start site region 49409
Tssr49410 5 138089283 to 138089295 12 + TSS region transcription start site region 49410
Tssr49411 5 138097649 to 138097650 1 + TSS region transcription start site region 49411
Tssr49412 5 138103735 to 138103739 4 + TSS region transcription start site region 49412
Gm43493 5 138106907 to 138107108 201 + pseudogene predicted gene 43493
Cpgi16853 5 138116785 to 138117281 496 CpG island CpG island 16853
Tssr54072 5 138116851 to 138116868 17 - TSS region transcription start site region 54072
Zscan21 5 138116903 to 138134265 17362 + protein coding gene zinc finger and SCAN domain containing 21
Tssr49413 5 138116911 to 138116986 75 + TSS region transcription start site region 49413
Zfp113 5 138139702 to 138155744 16042 - protein coding gene zinc finger protein 113
Cpgi16854 5 138155167 to 138155866 699 CpG island CpG island 16854
Tssr54073 5 138155694 to 138155740 46 - TSS region transcription start site region 54073
Cpgi16855 5 138160926 to 138161649 723 CpG island CpG island 16855
Tssr49414 5 138161083 to 138161116 33 + TSS region transcription start site region 49414
Cops6 5 138161102 to 138163984 2882 + protein coding gene COP9 signalosome subunit 6
Tssr49415 5 138161131 to 138161144 13 + TSS region transcription start site region 49415
Tssr49416 5 138161698 to 138161712 14 + TSS region transcription start site region 49416
Tssr49417 5 138162182 to 138162191 9 + TSS region transcription start site region 49417
Mcm7 5 138164589 to 138171883 7294 - protein coding gene minichromosome maintenance complex component 7
Mirc3 5 138165321 to 138165818 497 complex/cluster/region microRNA cluster 3, including Mir25 through Mir106b
Mir25 5 138165321 to 138165404 83 - miRNA gene microRNA 25
Mir93 5 138165523 to 138165610 87 - miRNA gene microRNA 93
Mir106b 5 138165737 to 138165818 81 - miRNA gene microRNA 106b
Cpgi16856 5 138170882 to 138172419 1537 CpG island CpG island 16856
Tssr1724 5 138170974 to 138170986 12 - TSS region transcription start site region 1724
Tssr54074 5 138170992 to 138171033 41 - TSS region transcription start site region 54074
Tssr54075 5 138171216 to 138171246 30 - TSS region transcription start site region 54075
Tssr54076 5 138171248 to 138171274 26 - TSS region transcription start site region 54076
Tssr49418 5 138171337 to 138171402 65 + TSS region transcription start site region 49418
Tssr54077 5 138171813 to 138171816 3 - TSS region transcription start site region 54077
Tssr54078 5 138171822 to 138171833 11 - TSS region transcription start site region 54078
Tssr54079 5 138171844 to 138171887 43 - TSS region transcription start site region 54079
Tssr49419 5 138171997 to 138172021 24 + TSS region transcription start site region 49419
Ap4m1 5 138172021 to 138180429 8408 + protein coding gene adaptor-related protein complex AP-4, mu 1
Tssr49420 5 138172110 to 138172132 22 + TSS region transcription start site region 49420
Tssr49421 5 138172141 to 138172188 47 + TSS region transcription start site region 49421
Tssr54080 5 138172358 to 138172365 7 - TSS region transcription start site region 54080
Tssr54081 5 138172383 to 138172418 35 - TSS region transcription start site region 54081
Taf6 5 138178617 to 138187446 8829 - protein coding gene TATA-box binding protein associated factor 6
Tssr49422 5 138180146 to 138180150 4 + TSS region transcription start site region 49422
Tssr54082 5 138184711 to 138184722 11 - TSS region transcription start site region 54082
Cpgi16857 5 138186938 to 138187291 353 CpG island CpG island 16857
Tssr54083 5 138187177 to 138187237 60 - TSS region transcription start site region 54083
Tssr54084 5 138187417 to 138187463 46 - TSS region transcription start site region 54084
Tssr49423 5 138187443 to 138187462 19 + TSS region transcription start site region 49423
Tssr49424 5 138187499 to 138187521 22 + TSS region transcription start site region 49424
Tssr49425 5 138187523 to 138187566 43 + TSS region transcription start site region 49425
Cnpy4 5 138187535 to 138193894 6359 + protein coding gene canopy FGF signaling regulator 4
Cpgi16858 5 138194181 to 138195273 1092 CpG island CpG island 16858
Tssr49426 5 138194277 to 138194326 49 + TSS region transcription start site region 49426
Mblac1 5 138194314 to 138195621 1307 + protein coding gene metallo-beta-lactamase domain containing 1
Tssr54085 5 138195545 to 138195552 7 - TSS region transcription start site region 54085
Tssr54086 5 138195633 to 138195658 25 - TSS region transcription start site region 54086
Gm454 5 138203609 to 138207308 3699 - lincRNA gene predicted gene 454
Tssr54087 5 138207269 to 138207301 32 - TSS region transcription start site region 54087
Tssr54088 5 138207302 to 138207317 15 - TSS region transcription start site region 54088
Gm43645 5 138207508 to 138207972 464 + lincRNA gene predicted gene 43645
D5Mit98 5 138218095 to 138218250 155 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 98
D5Dcr14 5 138218148 to 138218251 103 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 14
Tssr49427 5 138219733 to 138219740 7 + TSS region transcription start site region 49427
Gm22956 5 138219737 to 138219816 79 + snRNA gene predicted gene, 22956
Nxpe5 5 138225898 to 138253363 27465 + protein coding gene neurexophilin and PC-esterase domain family, member 5
Tssr54089 5 138227380 to 138227418 38 - TSS region transcription start site region 54089
Tssr49428 5 138229739 to 138229749 10 + TSS region transcription start site region 49428
Tssr49429 5 138229768 to 138229779 11 + TSS region transcription start site region 49429
Tssr49430 5 138229786 to 138229795 9 + TSS region transcription start site region 49430
Tssr49431 5 138229812 to 138229819 7 + TSS region transcription start site region 49431
Tssr49432 5 138229834 to 138229849 15 + TSS region transcription start site region 49432
Tssr49433 5 138229867 to 138229881 14 + TSS region transcription start site region 49433
Tssr1725 5 138231043 to 138231076 33 + TSS region transcription start site region 1725
Cpgi16859 5 138255480 to 138256019 539 CpG island CpG island 16859
Lamtor4 5 138255482 to 138259395 3913 + protein coding gene late endosomal/lysosomal adaptor, MAPK and MTOR activator 4
Tssr54090 5 138255542 to 138255600 58 - TSS region transcription start site region 54090
Tssr49434 5 138255714 to 138255725 11 + TSS region transcription start site region 49434
Tssr49435 5 138255727 to 138255788 61 + TSS region transcription start site region 49435
Tssr49436 5 138255855 to 138255866 11 + TSS region transcription start site region 49436
Tssr49437 5 138256067 to 138256123 56 + TSS region transcription start site region 49437
Tssr49438 5 138256124 to 138256135 11 + TSS region transcription start site region 49438
Map11 5 138259656 to 138264033 4377 - protein coding gene microtubule associated protein 11
Tssr49439 5 138262347 to 138262369 22 + TSS region transcription start site region 49439
Tssr49440 5 138262397 to 138262418 21 + TSS region transcription start site region 49440
Cpgi16860 5 138262899 to 138264149 1250 CpG island CpG island 16860
Tssr54091 5 138263117 to 138263133 16 - TSS region transcription start site region 54091
Tssr54092 5 138263942 to 138263988 46 - TSS region transcription start site region 54092
Tssr54093 5 138264013 to 138264060 47 - TSS region transcription start site region 54093
6330418K02Rik 5 138264045 to 138266661 2616 + antisense lncRNA gene RIKEN cDNA 6330418K02 gene
Tssr49441 5 138264057 to 138264097 40 + TSS region transcription start site region 49441
Tssr54094 5 138264122 to 138264147 25 - TSS region transcription start site region 54094
Gal3st4 5 138264921 to 138272840 7919 - protein coding gene galactose-3-O-sulfotransferase 4
Gm43720 5 138264952 to 138279958 15006 - protein coding gene predicted gene 43720
Tssr54095 5 138271504 to 138271519 15 - TSS region transcription start site region 54095
Tssr54096 5 138272733 to 138272743 10 - TSS region transcription start site region 54096
Tssr54097 5 138272786 to 138272817 31 - TSS region transcription start site region 54097
Gpc2 5 138273655 to 138280005 6350 - protein coding gene glypican 2 (cerebroglycan)
Cpgi16861 5 138275480 to 138276065 585 CpG island CpG island 16861
Cpgi16862 5 138279617 to 138280733 1116 CpG island CpG island 16862
Tssr54098 5 138279960 to 138280016 56 - TSS region transcription start site region 54098
Stag3 5 138280240 to 138312393 32153 + protein coding gene stromal antigen 3
Tssr49442 5 138280337 to 138280355 18 + TSS region transcription start site region 49442
Tssr49443 5 138280492 to 138280504 12 + TSS region transcription start site region 49443
Tssr49444 5 138280516 to 138280537 21 + TSS region transcription start site region 49444
Tssr49445 5 138280538 to 138280563 25 + TSS region transcription start site region 49445