Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:136273461-136643480

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cux1 5 136248135 to 136567490 319355 - protein coding gene cut-like homeobox 1
Cpgi16792 5 136274620 to 136275523 903 CpG island CpG island 16792
Tssr53830 5 136276258 to 136276260 2 - TSS region transcription start site region 53830
Tssr53831 5 136302501 to 136302511 10 - TSS region transcription start site region 53831
Tssr53832 5 136302515 to 136302537 22 - TSS region transcription start site region 53832
Tssr53833 5 136318427 to 136318432 5 - TSS region transcription start site region 53833
D5Mit265 5 136325395 to 136325533 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 265
A430110C17Rik 5 136345884 to 136350231 4347 - unclassified gene RIKEN cDNA A430110C17 gene
Tssr53834 5 136370985 to 136370988 3 - TSS region transcription start site region 53834
Mir721 5 136375716 to 136375803 87 - miRNA gene microRNA 721
Tssr53835 5 136392393 to 136392397 4 - TSS region transcription start site region 53835
Gm16599 5 136392409 to 136417294 24885 + antisense lncRNA gene predicted gene, 16599
Tssr53836 5 136423101 to 136423111 10 - TSS region transcription start site region 53836
Tssr53837 5 136432192 to 136432208 16 - TSS region transcription start site region 53837
Tssr53838 5 136438824 to 136438828 4 - TSS region transcription start site region 53838
Tssr53839 5 136458461 to 136458480 19 - TSS region transcription start site region 53839
Tssr53840 5 136458507 to 136458520 13 - TSS region transcription start site region 53840
Tssr53841 5 136459980 to 136459989 9 - TSS region transcription start site region 53841
Tssr1673 5 136460319 to 136460324 5 + TSS region transcription start site region 1673
Tssr53842 5 136466064 to 136466070 6 - TSS region transcription start site region 53842
Tssr53843 5 136471914 to 136471927 13 - TSS region transcription start site region 53843
Tssr53844 5 136472021 to 136472068 47 - TSS region transcription start site region 53844
Tssr53845 5 136472411 to 136472417 6 - TSS region transcription start site region 53845
Tssr53846 5 136510718 to 136510740 22 - TSS region transcription start site region 53846
Gm38082 5 136529596 to 136536477 6881 - unclassified gene predicted gene, 38082
2600010L24Rik 5 136542296 to 136544055 1759 unclassified gene RIKEN cDNA 2600010L24 gene
Tssr53847 5 136546835 to 136546840 5 - TSS region transcription start site region 53847
Tssr53848 5 136549593 to 136549601 8 - TSS region transcription start site region 53848
Tssr53849 5 136563321 to 136563325 4 - TSS region transcription start site region 53849
Tssr49254 5 136564201 to 136564209 8 + TSS region transcription start site region 49254
Cpgi16793 5 136565316 to 136568333 3017 CpG island CpG island 16793
Tssr53850 5 136565514 to 136565530 16 - TSS region transcription start site region 53850
Tssr53851 5 136565703 to 136565724 21 - TSS region transcription start site region 53851
Tssr53852 5 136566090 to 136566107 17 - TSS region transcription start site region 53852
Tssr53853 5 136566363 to 136566375 12 - TSS region transcription start site region 53853
Tssr53854 5 136566468 to 136566502 34 - TSS region transcription start site region 53854
Tssr53855 5 136566587 to 136566628 41 - TSS region transcription start site region 53855
Tssr53856 5 136567242 to 136567287 45 - TSS region transcription start site region 53856
Tssr53857 5 136567307 to 136567320 13 - TSS region transcription start site region 53857
Tssr53858 5 136567529 to 136567536 7 - TSS region transcription start site region 53858
Tssr53859 5 136567937 to 136567984 47 - TSS region transcription start site region 53859
Cpgi16794 5 136568682 to 136569188 506 CpG island CpG island 16794
Tssr53860 5 136581571 to 136581580 9 - TSS region transcription start site region 53860
Tssr53861 5 136581620 to 136581636 16 - TSS region transcription start site region 53861
Tssr1674 5 136581643 to 136581648 5 - TSS region transcription start site region 1674
Tssr53862 5 136581670 to 136581680 10 - TSS region transcription start site region 53862
Tssr53863 5 136581683 to 136581688 5 - TSS region transcription start site region 53863
Tssr1675 5 136581698 to 136581703 5 - TSS region transcription start site region 1675
Tssr53864 5 136581720 to 136581743 23 - TSS region transcription start site region 53864
Tssr53865 5 136581752 to 136581771 19 - TSS region transcription start site region 53865
Tssr53866 5 136581780 to 136581785 5 - TSS region transcription start site region 53866
Tssr53867 5 136581849 to 136581870 21 - TSS region transcription start site region 53867
Cpgi16795 5 136623121 to 136623535 414 CpG island CpG island 16795
Tssr53868 5 136623123 to 136623141 18 - TSS region transcription start site region 53868
Gm38722 5 136632332 to 136675425 43093 + lncRNA gene predicted gene, 38722