Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135486138-135686154

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hip1 5 135406531 to 135545120 138589 - protein coding gene huntingtin interacting protein 1
Cpgi16756 5 135488632 to 135489729 1097 CpG island CpG island 16756
Tssr53744 5 135489196 to 135489237 41 - TSS region transcription start site region 53744
Tssr53745 5 135489248 to 135489277 29 - TSS region transcription start site region 53745
Tssr53746 5 135527716 to 135527729 13 - TSS region transcription start site region 53746
Tssr53747 5 135543266 to 135543274 8 - TSS region transcription start site region 53747
Cpgi16757 5 135544458 to 135545949 1491 CpG island CpG island 16757
Tssr53748 5 135545059 to 135545091 32 - TSS region transcription start site region 53748
Tssr53749 5 135545108 to 135545128 20 - TSS region transcription start site region 53749
Cpgi16758 5 135558192 to 135558596 404 CpG island CpG island 16758
Ccl26 5 135560448 to 135563569 3121 - protein coding gene chemokine (C-C motif) ligand 26
Ccl24 5 135569937 to 135573049 3112 - protein coding gene chemokine (C-C motif) ligand 24
Tssr53750 5 135573002 to 135573029 27 - TSS region transcription start site region 53750
Tssr53751 5 135573036 to 135573051 15 - TSS region transcription start site region 53751
Tssr53752 5 135586119 to 135586130 11 - TSS region transcription start site region 53752
Tssr53753 5 135586138 to 135586154 16 - TSS region transcription start site region 53753
Gm43123 5 135613829 to 135617299 3470 - unclassified gene predicted gene 43123
Tssr53754 5 135623595 to 135623644 49 - TSS region transcription start site region 53754
Cpgi16759 5 135632487 to 135633113 626 CpG island CpG island 16759
Tssr49164 5 135632638 to 135632647 9 + TSS region transcription start site region 49164
Rhbdd2 5 135632654 to 135646376 13722 + protein coding gene rhomboid domain containing 2
Tssr49165 5 135632681 to 135632694 13 + TSS region transcription start site region 49165
Tssr49166 5 135632696 to 135632727 31 + TSS region transcription start site region 49166
Gm15607 5 135637139 to 135637496 357 - pseudogene predicted gene 15607
Tssr49167 5 135640808 to 135640812 4 + TSS region transcription start site region 49167
Gm21839 5 135643955 to 135644336 381 - pseudogene predicted gene, 21839
Gm43091 5 135653810 to 135672987 19177 - lincRNA gene predicted gene 43091
Tssr49168 5 135669977 to 135669984 7 + TSS region transcription start site region 49168
Tssr49169 5 135670027 to 135670042 15 + TSS region transcription start site region 49169
Por 5 135670040 to 135735326 65286 + protein coding gene P450 (cytochrome) oxidoreductase
Tssr49170 5 135671494 to 135671500 6 + TSS region transcription start site region 49170
Tssr49171 5 135674572 to 135674592 20 + TSS region transcription start site region 49171
Tssr49172 5 135685750 to 135685754 4 + TSS region transcription start site region 49172
Gm40345 5 135685941 to 135687772 1831 - lncRNA gene predicted gene, 40345