Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:135039417-135140136

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stx1a 5 135023482 to 135051100 27618 + protein coding gene syntaxin 1A (brain)
Tssr49131 5 135041125 to 135041165 40 + TSS region transcription start site region 49131
Cpgi16738 5 135041936 to 135042219 283 CpG island CpG island 16738
Bud23 5 135052957 to 135064666 11709 - protein coding gene BUD23, rRNA methyltransferase and ribosome maturation factor
Tssr1665 5 135053405 to 135053428 23 - TSS region transcription start site region 1665
Gm25492 5 135053988 to 135054116 128 - snoRNA gene predicted gene, 25492
D5Mit325 5 135059703 to 135059822 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 325
Cpgi16739 5 135063695 to 135064946 1251 CpG island CpG island 16739
Tssr53723 5 135064051 to 135064060 9 - TSS region transcription start site region 53723
Tssr53724 5 135064063 to 135064116 53 - TSS region transcription start site region 53724
Dnajc30 5 135064206 to 135065365 1159 + protein coding gene DnaJ heat shock protein family (Hsp40) member C30
Tssr49132 5 135064220 to 135064254 34 + TSS region transcription start site region 49132
Vps37d 5 135072900 to 135078266 5366 - protein coding gene vacuolar protein sorting 37D
Cpgi16740 5 135077704 to 135078668 964 CpG island CpG island 16740
Tssr53725 5 135078224 to 135078260 36 - TSS region transcription start site region 53725
Tssr53726 5 135078276 to 135078311 35 - TSS region transcription start site region 53726
Tssr53727 5 135078314 to 135078346 32 - TSS region transcription start site region 53727
Cpgi16741 5 135089417 to 135090136 719 CpG island CpG island 16741
Tssr49133 5 135089884 to 135089896 12 + TSS region transcription start site region 49133
Mlxipl 5 135089891 to 135138382 48491 + protein coding gene MLX interacting protein-like
Tssr49134 5 135089916 to 135089930 14 + TSS region transcription start site region 49134
Cpgi16742 5 135106600 to 135108326 1726 CpG island CpG island 16742
Tssr49135 5 135106881 to 135106918 37 + TSS region transcription start site region 49135
Tssr49136 5 135121748 to 135121782 34 + TSS region transcription start site region 49136
Gm43500 5 135122410 to 135123293 883 - antisense lncRNA gene predicted gene 43500
Tssr49137 5 135123734 to 135123760 26 + TSS region transcription start site region 49137
Tssr49138 5 135126420 to 135126427 7 + TSS region transcription start site region 49138
Tssr49139 5 135128659 to 135128670 11 + TSS region transcription start site region 49139
Tssr49140 5 135132331 to 135132343 12 + TSS region transcription start site region 49140
Tssr53728 5 135132462 to 135132467 5 - TSS region transcription start site region 53728
Cpgi16743 5 135133572 to 135134592 1020 CpG island CpG island 16743