Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:134680611-134960706

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Del(5Gtf2i-Limk1)1Uta 5 134237834 to 134688598 450764 chromosomal deletion deletion, Chr 5, Uta Francke 1
Limk1 5 134656039 to 134688598 32559 - protein coding gene LIM-domain containing, protein kinase
Cpgi16726 5 134688058 to 134689388 1330 CpG island CpG island 16726
Tssr53668 5 134688556 to 134688563 7 - TSS region transcription start site region 53668
Tssr53669 5 134688568 to 134688587 19 - TSS region transcription start site region 53669
Tssr53670 5 134688595 to 134688637 42 - TSS region transcription start site region 53670
Tssr53671 5 134688639 to 134688650 11 - TSS region transcription start site region 53671
Eln 5 134702593 to 134747323 44730 - protein coding gene elastin
Tssr53672 5 134703015 to 134703025 10 - TSS region transcription start site region 53672
Tssr53673 5 134703062 to 134703067 5 - TSS region transcription start site region 53673
Tssr49100 5 134703065 to 134703080 15 + TSS region transcription start site region 49100
Tssr53674 5 134703154 to 134703174 20 - TSS region transcription start site region 53674
Tssr53675 5 134703182 to 134703187 5 - TSS region transcription start site region 53675
Tssr53676 5 134703236 to 134703248 12 - TSS region transcription start site region 53676
Tssr53677 5 134703337 to 134703353 16 - TSS region transcription start site region 53677
Tssr53678 5 134703368 to 134703383 15 - TSS region transcription start site region 53678
Tssr53679 5 134703388 to 134703406 18 - TSS region transcription start site region 53679
Tssr53680 5 134703421 to 134703439 18 - TSS region transcription start site region 53680
Tssr53681 5 134703516 to 134703536 20 - TSS region transcription start site region 53681
Tssr49101 5 134703554 to 134703565 11 + TSS region transcription start site region 49101
Tssr53682 5 134703564 to 134703606 42 - TSS region transcription start site region 53682
Tssr53683 5 134703812 to 134703824 12 - TSS region transcription start site region 53683
Tssr53684 5 134711201 to 134711249 48 - TSS region transcription start site region 53684
Tssr53685 5 134714015 to 134714053 38 - TSS region transcription start site region 53685
Tssr53686 5 134721556 to 134721568 12 - TSS region transcription start site region 53686
Tssr49102 5 134722026 to 134722052 26 + TSS region transcription start site region 49102
Tssr53687 5 134722059 to 134722063 4 - TSS region transcription start site region 53687
Tssr53688 5 134723171 to 134723190 19 - TSS region transcription start site region 53688
Tssr53689 5 134723212 to 134723225 13 - TSS region transcription start site region 53689
Tssr53690 5 134739505 to 134739509 4 - TSS region transcription start site region 53690
D5Mit282 5 134746693 to 134746794 101 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 282
Cpgi16727 5 134747005 to 134747350 345 CpG island CpG island 16727
Gm30003 5 134747044 to 134822968 75924 + antisense lncRNA gene predicted gene, 30003
Tssr53691 5 134747247 to 134747264 17 - TSS region transcription start site region 53691
Tssr53692 5 134747438 to 134747468 30 - TSS region transcription start site region 53692
Tssr49103 5 134755459 to 134755462 3 + TSS region transcription start site region 49103
Cpgi16728 5 134804340 to 134804537 197 CpG island CpG island 16728
D5Dcr13 5 134820611 to 134820706 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 13
D5Mit219 5 134841055 to 134841178 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 219
Tssr49104 5 134858415 to 134858418 3 + TSS region transcription start site region 49104
Tmem270 5 134901593 to 134906733 5140 - protein coding gene transmembrane protein 270
Tssr53693 5 134906719 to 134906724 5 - TSS region transcription start site region 53693
Tssr53694 5 134906726 to 134906744 18 - TSS region transcription start site region 53694
Cpgi16729 5 134907244 to 134907471 227 CpG island CpG island 16729
Cldn13 5 134914249 to 134915526 1277 - protein coding gene claudin 13
Tssr1659 5 134915385 to 134915406 21 - TSS region transcription start site region 1659
Tssr53695 5 134915470 to 134915486 16 - TSS region transcription start site region 53695
Tssr53696 5 134915494 to 134915505 11 - TSS region transcription start site region 53696
Tssr53697 5 134915512 to 134915542 30 - TSS region transcription start site region 53697
4933439J24Rik 5 134919788 to 134920640 852 + lincRNA gene RIKEN cDNA 4933439J24 gene
9030607J07Rik 5 134929848 to 134931469 1621 - lncRNA gene RIKEN cDNA 9030607J07 gene
Cpgi16730 5 134932194 to 134932890 696 CpG island CpG island 16730
Tssr49105 5 134932351 to 134932382 31 + TSS region transcription start site region 49105
Mettl27 5 134932368 to 134942637 10269 + protein coding gene methyltransferase like 27
Tssr49106 5 134932395 to 134932422 27 + TSS region transcription start site region 49106
Tssr53698 5 134932671 to 134932688 17 - TSS region transcription start site region 53698
Tssr1660 5 134938452 to 134938453 1 + TSS region transcription start site region 1660
Cldn4 5 134945123 to 134946934 1811 - protein coding gene claudin 4
Tssr49107 5 134945126 to 134945130 4 + TSS region transcription start site region 49107
Tssr53699 5 134945251 to 134945258 7 - TSS region transcription start site region 53699
Tssr49108 5 134945268 to 134945307 39 + TSS region transcription start site region 49108
Tssr53700 5 134945816 to 134945836 20 - TSS region transcription start site region 53700
Tssr53701 5 134946021 to 134946031 10 - TSS region transcription start site region 53701
Cpgi16731 5 134946085 to 134946772 687 CpG island CpG island 16731
Tssr49109 5 134946119 to 134946181 62 + TSS region transcription start site region 49109
Tssr53702 5 134946255 to 134946271 16 - TSS region transcription start site region 53702
Tssr53703 5 134946439 to 134946443 4 - TSS region transcription start site region 53703
Tssr53704 5 134946896 to 134946906 10 - TSS region transcription start site region 53704
Tssr53705 5 134946917 to 134946945 28 - TSS region transcription start site region 53705
Tssr53706 5 134951118 to 134951145 27 - TSS region transcription start site region 53706
Cpgi16732 5 134951798 to 134951961 163 CpG island CpG island 16732
D5Mit322 5 134957043 to 134957166 123 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 322
Tssr49110 5 134957787 to 134957832 45 + TSS region transcription start site region 49110