Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:128558047-129348066

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38612 5 128570190 to 128576533 6343 + lncRNA gene predicted gene, 38612
Tssr48977 5 128570733 to 128570753 20 + TSS region transcription start site region 48977
Cpgi16661 5 128577820 to 128578067 247 CpG island CpG island 16661
5930412G12Rik 5 128579130 to 128600687 21557 - lincRNA gene RIKEN cDNA 5930412G12 gene
Tssr1642 5 128585353 to 128585355 2 + TSS region transcription start site region 1642
Gm42498 5 128596585 to 128597956 1371 - unclassified gene predicted gene 42498
Tssr48978 5 128596904 to 128596924 20 + TSS region transcription start site region 48978
Cpgi16662 5 128596959 to 128597204 245 CpG island CpG island 16662
Cpgi16663 5 128599739 to 128602521 2782 CpG island CpG island 16663
Tssr53469 5 128600642 to 128600673 31 - TSS region transcription start site region 53469
Tssr53470 5 128600674 to 128600706 32 - TSS region transcription start site region 53470
Tssr48979 5 128600800 to 128600816 16 + TSS region transcription start site region 48979
Tssr48980 5 128600821 to 128600828 7 + TSS region transcription start site region 48980
Tssr48981 5 128600830 to 128600848 18 + TSS region transcription start site region 48981
Fzd10 5 128601106 to 128604093 2987 + protein coding gene frizzled class receptor 10
Tssr48982 5 128603660 to 128603665 5 + TSS region transcription start site region 48982
Gm33931 5 128644147 to 128656806 12659 - lncRNA gene predicted gene, 33931
Cpgi16664 5 128667772 to 128668104 332 CpG island CpG island 16664
Gm33995 5 128705420 to 128709399 3979 - lncRNA gene predicted gene, 33995
Tssr1643 5 128717447 to 128717450 3 + TSS region transcription start site region 1643
4930553I04Rik 5 128735360 to 128736029 669 - unclassified gene RIKEN cDNA 4930553I04 gene
Cpgi16665 5 128735848 to 128736402 554 CpG island CpG island 16665
Tssr53471 5 128736011 to 128736018 7 - TSS region transcription start site region 53471
Piwil1 5 128736070 to 128755474 19404 + protein coding gene piwi-like RNA-mediated gene silencing 1
Tssr48983 5 128736086 to 128736093 7 + TSS region transcription start site region 48983
Tssr48984 5 128736125 to 128736132 7 + TSS region transcription start site region 48984
Tssr1644 5 128736160 to 128736161 1 + TSS region transcription start site region 1644
Tssr48985 5 128736168 to 128736187 19 + TSS region transcription start site region 48985
Tssr48986 5 128736242 to 128736247 5 + TSS region transcription start site region 48986
Tssr48987 5 128755127 to 128755143 16 + TSS region transcription start site region 48987
Tssr1645 5 128757303 to 128757309 6 + TSS region transcription start site region 1645
Rimbp2 5 128757791 to 128953486 195695 - protein coding gene RIMS binding protein 2
Gm42875 5 128769524 to 128777837 8313 + antisense lncRNA gene predicted gene 42875
Gm42871 5 128774525 to 128775550 1025 - sense intronic lncRNA gene predicted gene 42871
Cpgi16666 5 128781710 to 128782378 668 CpG island CpG island 16666
Tssr48988 5 128814349 to 128814350 1 + TSS region transcription start site region 48988
Gm34057 5 128817927 to 128821701 3774 + lncRNA gene predicted gene, 34057
Tssr53472 5 128819892 to 128819928 36 - TSS region transcription start site region 53472
Tssr53473 5 128820053 to 128820082 29 - TSS region transcription start site region 53473
Tssr53474 5 128904252 to 128904266 14 - TSS region transcription start site region 53474
Cpgi16667 5 128952216 to 128952914 698 CpG island CpG island 16667
Tssr53475 5 128953047 to 128953066 19 - TSS region transcription start site region 53475
Tssr53476 5 128953303 to 128953331 28 - TSS region transcription start site region 53476
D5Mit243 5 128979164 to 128979312 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 243
Stx2 5 128984557 to 129008574 24017 - protein coding gene syntaxin 2
Tssr53477 5 128989921 to 128989935 14 - TSS region transcription start site region 53477
Tssr53478 5 129002708 to 129002737 29 - TSS region transcription start site region 53478
Tssr53479 5 129007523 to 129007526 3 - TSS region transcription start site region 53479
Cpgi16668 5 129007784 to 129008826 1042 CpG island CpG island 16668
Tssr53480 5 129008494 to 129008537 43 - TSS region transcription start site region 53480
Tssr53481 5 129008546 to 129008596 50 - TSS region transcription start site region 53481
Cpgi16669 5 129019388 to 129021093 1705 CpG island CpG island 16669
Tssr48989 5 129019727 to 129019761 34 + TSS region transcription start site region 48989
Ran 5 129020156 to 129024322 4166 + protein coding gene RAN, member RAS oncogene family
Tssr48990 5 129020193 to 129020253 60 + TSS region transcription start site region 48990
Tssr48991 5 129020433 to 129020440 7 + TSS region transcription start site region 48991
Tssr48992 5 129020459 to 129020501 42 + TSS region transcription start site region 48992
Tssr48993 5 129020504 to 129020523 19 + TSS region transcription start site region 48993
Tssr48994 5 129020691 to 129020711 20 + TSS region transcription start site region 48994
Gm38615 5 129063578 to 129068908 5330 + lncRNA gene predicted gene, 38615
Tssr48995 5 129096655 to 129096671 16 + TSS region transcription start site region 48995
Tssr48996 5 129096716 to 129096726 10 + TSS region transcription start site region 48996
Tssr48997 5 129096740 to 129096771 31 + TSS region transcription start site region 48997
Adgrd1 5 129096750 to 129204599 107849 + protein coding gene adhesion G protein-coupled receptor D1
Tssr48998 5 129096780 to 129096800 20 + TSS region transcription start site region 48998
Cpgi16670 5 129111533 to 129111714 181 CpG island CpG island 16670
Gm46923 5 129113378 to 129117899 4521 - lncRNA gene predicted gene, 46923
Tssr48999 5 129114998 to 129115014 16 + TSS region transcription start site region 48999
Tssr53482 5 129116608 to 129116622 14 - TSS region transcription start site region 53482
Rps16-ps2 5 129128077 to 129128517 440 - pseudogene ribosomal protein S16, pseudogene 2
Tssr53483 5 129128563 to 129128575 12 - TSS region transcription start site region 53483
D5Mit163 5 129139863 to 129140004 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 163
Tssr49000 5 129160758 to 129160761 3 + TSS region transcription start site region 49000
Tssr49001 5 129174275 to 129174322 47 + TSS region transcription start site region 49001
Tssr49002 5 129204327 to 129204332 5 + TSS region transcription start site region 49002
D5Mit427 5 129212105 to 129212215 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 427
Tssr49003 5 129234182 to 129234186 4 + TSS region transcription start site region 49003
Tssr49004 5 129235034 to 129235038 4 + TSS region transcription start site region 49004
D5Mit339 5 129242998 to 129243112 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 339
Cpgi16671 5 129264498 to 129264667 169 CpG island CpG island 16671
Gm34145 5 129306596 to 129308013 1417 - lncRNA gene predicted gene, 34145