Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:127172447-130262450

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336 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
4930572K03Rik 5 127170565 to 127184356 13791 + lincRNA gene RIKEN cDNA 4930572K03 gene
Gm43476 5 127200693 to 127201097 404 - lincRNA gene predicted gene 43476
4930548G05Rik 5 127202362 to 127230534 28172 - lncRNA gene RIKEN cDNA 4930548G05 gene
Cpgi16652 5 127241267 to 127243319 2052 CpG island CpG island 16652
Tssr48959 5 127241785 to 127241798 13 + TSS region transcription start site region 48959
Tssr48960 5 127241807 to 127241849 42 + TSS region transcription start site region 48960
Tmem132c 5 127241826 to 127565790 323964 + protein coding gene transmembrane protein 132C
Cpgi16653 5 127243321 to 127243820 499 CpG island CpG island 16653
Tssr48961 5 127245146 to 127245153 7 + TSS region transcription start site region 48961
Tmem132cos 5 127256860 to 127281623 24763 - antisense lncRNA gene transmembrane protein 132C, opposite strand
Tssr48962 5 127257164 to 127257166 2 + TSS region transcription start site region 48962
Tssr53461 5 127281572 to 127281608 36 - TSS region transcription start site region 53461
Tssr53462 5 127281620 to 127281627 7 - TSS region transcription start site region 53462
D5Mit212 5 127299938 to 127300059 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 212
Tssr48963 5 127302607 to 127302611 4 + TSS region transcription start site region 48963
9430087B13Rik 5 127309017 to 127310101 1084 + unclassified gene RIKEN cDNA 9430087B13 gene
Tssr48964 5 127406659 to 127406661 2 + TSS region transcription start site region 48964
Tssr48965 5 127554721 to 127554732 11 + TSS region transcription start site region 48965
Tssr48966 5 127564295 to 127564299 4 + TSS region transcription start site region 48966
Gm42980 5 127578750 to 127580109 1359 + lincRNA gene predicted gene 42980
Slc15a4 5 127595664 to 127632897 37233 - protein coding gene solute carrier family 15, member 4
Tssr48967 5 127615700 to 127615718 18 + TSS region transcription start site region 48967
Tssr48968 5 127615810 to 127615822 12 + TSS region transcription start site region 48968
Cpgi16654 5 127616158 to 127617701 1543 CpG island CpG island 16654
Gm43474 5 127616992 to 127617765 773 + unclassified gene predicted gene 43474
Tssr53463 5 127617343 to 127617354 11 - TSS region transcription start site region 53463
Tssr53464 5 127617372 to 127617426 54 - TSS region transcription start site region 53464
Tssr48969 5 127632057 to 127632075 18 + TSS region transcription start site region 48969
Glt1d1 5 127632130 to 127708750 76620 + protein coding gene glycosyltransferase 1 domain containing 1
Cpgi16655 5 127632168 to 127633002 834 CpG island CpG island 16655
Tssr48970 5 127632238 to 127632271 33 + TSS region transcription start site region 48970
Tssr53465 5 127632915 to 127632946 31 - TSS region transcription start site region 53465
Tssr53466 5 127633260 to 127633263 3 - TSS region transcription start site region 53466
Tssr48971 5 127657495 to 127657500 5 + TSS region transcription start site region 48971
D5Mit215 5 127674588 to 127674706 118 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 215
D5Dcr11 5 127674601 to 127674696 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 11
D5Mit383 5 127680178 to 127680281 103 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology-383
Tssr48972 5 127700619 to 127700630 11 + TSS region transcription start site region 48972
D5Mit59 5 127717541 to 127717662 121 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 59
Cpgi16656 5 127741383 to 127741570 187 CpG island CpG island 16656
Tssr53467 5 127783160 to 127783189 29 - TSS region transcription start site region 53467
Tmem132d 5 127783491 to 128433077 649586 - protein coding gene transmembrane protein 132D
Tssr48973 5 127793284 to 127793285 1 + TSS region transcription start site region 48973
Gm17132 5 127877333 to 127878490 1157 + pseudogene predicted gene 17132
Gm17131 5 127878531 to 127882376 3845 + pseudogene predicted gene 17131
Tssr48974 5 127896241 to 127896248 7 + TSS region transcription start site region 48974
Tssr48975 5 127905703 to 127905718 15 + TSS region transcription start site region 48975
D5Mit371 5 128081070 to 128081187 117 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 371
D5Mit217 5 128095566 to 128095757 191 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 217
Gm42497 5 128239382 to 128241339 1957 - unclassified gene predicted gene 42497
Cpgi16657 5 128268669 to 128269284 615 CpG island CpG island 16657
Gm42496 5 128295628 to 128298868 3240 - unclassified gene predicted gene 42496
Gm42817 5 128336777 to 128342778 6001 + antisense lncRNA gene predicted gene 42817
Cpgi16658 5 128432005 to 128433428 1423 CpG island CpG island 16658
Tssr53468 5 128433066 to 128433095 29 - TSS region transcription start site region 53468
Gm33738 5 128443488 to 128449804 6316 + lncRNA gene predicted gene, 33738
Tssr48976 5 128443551 to 128443560 9 + TSS region transcription start site region 48976
D5Mit244 5 128443690 to 128443828 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 244
Cpgi16659 5 128444298 to 128444640 342 CpG island CpG island 16659
Tssr1641 5 128444337 to 128444346 9 + TSS region transcription start site region 1641
Gm42495 5 128444416 to 128447731 3315 + lincRNA gene predicted gene 42495
Gm42500 5 128448904 to 128449782 878 + lincRNA gene predicted gene 42500
Cpgi16660 5 128482763 to 128483081 318 CpG island CpG island 16660
4930573I07Rik 5 128516115 to 128517634 1519 - lincRNA gene RIKEN cDNA 4930573I07 gene
Gm42499 5 128520221 to 128521632 1411 + unclassified gene predicted gene 42499
D5Mit321 5 128536439 to 128536537 98 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 321
Gm38612 5 128570190 to 128576533 6343 + lncRNA gene predicted gene, 38612
Tssr48977 5 128570733 to 128570753 20 + TSS region transcription start site region 48977
Cpgi16661 5 128577820 to 128578067 247 CpG island CpG island 16661
5930412G12Rik 5 128579130 to 128600687 21557 - lincRNA gene RIKEN cDNA 5930412G12 gene
Tssr1642 5 128585353 to 128585355 2 + TSS region transcription start site region 1642
Gm42498 5 128596585 to 128597956 1371 - unclassified gene predicted gene 42498
Tssr48978 5 128596904 to 128596924 20 + TSS region transcription start site region 48978
Cpgi16662 5 128596959 to 128597204 245 CpG island CpG island 16662
Cpgi16663 5 128599739 to 128602521 2782 CpG island CpG island 16663
Tssr53469 5 128600642 to 128600673 31 - TSS region transcription start site region 53469
Tssr53470 5 128600674 to 128600706 32 - TSS region transcription start site region 53470
Tssr48979 5 128600800 to 128600816 16 + TSS region transcription start site region 48979
Tssr48980 5 128600821 to 128600828 7 + TSS region transcription start site region 48980
Tssr48981 5 128600830 to 128600848 18 + TSS region transcription start site region 48981
Fzd10 5 128601106 to 128604093 2987 + protein coding gene frizzled class receptor 10
Tssr48982 5 128603660 to 128603665 5 + TSS region transcription start site region 48982
Gm33931 5 128644147 to 128656806 12659 - lncRNA gene predicted gene, 33931
Cpgi16664 5 128667772 to 128668104 332 CpG island CpG island 16664
Gm33995 5 128705420 to 128709399 3979 - lncRNA gene predicted gene, 33995
Tssr1643 5 128717447 to 128717450 3 + TSS region transcription start site region 1643
4930553I04Rik 5 128735360 to 128736029 669 - unclassified gene RIKEN cDNA 4930553I04 gene
Cpgi16665 5 128735848 to 128736402 554 CpG island CpG island 16665
Tssr53471 5 128736011 to 128736018 7 - TSS region transcription start site region 53471
Piwil1 5 128736070 to 128755474 19404 + protein coding gene piwi-like RNA-mediated gene silencing 1
Tssr48983 5 128736086 to 128736093 7 + TSS region transcription start site region 48983
Tssr48984 5 128736125 to 128736132 7 + TSS region transcription start site region 48984
Tssr1644 5 128736160 to 128736161 1 + TSS region transcription start site region 1644
Tssr48985 5 128736168 to 128736187 19 + TSS region transcription start site region 48985
Tssr48986 5 128736242 to 128736247 5 + TSS region transcription start site region 48986
Tssr48987 5 128755127 to 128755143 16 + TSS region transcription start site region 48987
Tssr1645 5 128757303 to 128757309 6 + TSS region transcription start site region 1645
Rimbp2 5 128757791 to 128953486 195695 - protein coding gene RIMS binding protein 2
Gm42875 5 128769524 to 128777837 8313 + antisense lncRNA gene predicted gene 42875
Gm42871 5 128774525 to 128775550 1025 - sense intronic lncRNA gene predicted gene 42871
Cpgi16666 5 128781710 to 128782378 668 CpG island CpG island 16666
Tssr48988 5 128814349 to 128814350 1 + TSS region transcription start site region 48988
Gm34057 5 128817927 to 128821701 3774 + lncRNA gene predicted gene, 34057
Tssr53472 5 128819892 to 128819928 36 - TSS region transcription start site region 53472
Tssr53473 5 128820053 to 128820082 29 - TSS region transcription start site region 53473
Tssr53474 5 128904252 to 128904266 14 - TSS region transcription start site region 53474
Cpgi16667 5 128952216 to 128952914 698 CpG island CpG island 16667
Tssr53475 5 128953047 to 128953066 19 - TSS region transcription start site region 53475
Tssr53476 5 128953303 to 128953331 28 - TSS region transcription start site region 53476
D5Mit243 5 128979164 to 128979312 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 243
Stx2 5 128984557 to 129008574 24017 - protein coding gene syntaxin 2
Tssr53477 5 128989921 to 128989935 14 - TSS region transcription start site region 53477
Tssr53478 5 129002708 to 129002737 29 - TSS region transcription start site region 53478
Tssr53479 5 129007523 to 129007526 3 - TSS region transcription start site region 53479
Cpgi16668 5 129007784 to 129008826 1042 CpG island CpG island 16668
Tssr53480 5 129008494 to 129008537 43 - TSS region transcription start site region 53480
Tssr53481 5 129008546 to 129008596 50 - TSS region transcription start site region 53481
Cpgi16669 5 129019388 to 129021093 1705 CpG island CpG island 16669
Tssr48989 5 129019727 to 129019761 34 + TSS region transcription start site region 48989
Ran 5 129020156 to 129024322 4166 + protein coding gene RAN, member RAS oncogene family
Tssr48990 5 129020193 to 129020253 60 + TSS region transcription start site region 48990
Tssr48991 5 129020433 to 129020440 7 + TSS region transcription start site region 48991
Tssr48992 5 129020459 to 129020501 42 + TSS region transcription start site region 48992
Tssr48993 5 129020504 to 129020523 19 + TSS region transcription start site region 48993
Tssr48994 5 129020691 to 129020711 20 + TSS region transcription start site region 48994
Gm38615 5 129063578 to 129068908 5330 + lncRNA gene predicted gene, 38615
Tssr48995 5 129096655 to 129096671 16 + TSS region transcription start site region 48995
Tssr48996 5 129096716 to 129096726 10 + TSS region transcription start site region 48996
Tssr48997 5 129096740 to 129096771 31 + TSS region transcription start site region 48997
Adgrd1 5 129096750 to 129204599 107849 + protein coding gene adhesion G protein-coupled receptor D1
Tssr48998 5 129096780 to 129096800 20 + TSS region transcription start site region 48998
Cpgi16670 5 129111533 to 129111714 181 CpG island CpG island 16670
Gm46923 5 129113378 to 129117899 4521 - lncRNA gene predicted gene, 46923
Tssr48999 5 129114998 to 129115014 16 + TSS region transcription start site region 48999
Tssr53482 5 129116608 to 129116622 14 - TSS region transcription start site region 53482
Rps16-ps2 5 129128077 to 129128517 440 - pseudogene ribosomal protein S16, pseudogene 2
Tssr53483 5 129128563 to 129128575 12 - TSS region transcription start site region 53483
D5Mit163 5 129139863 to 129140004 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 163
Tssr49000 5 129160758 to 129160761 3 + TSS region transcription start site region 49000
Tssr49001 5 129174275 to 129174322 47 + TSS region transcription start site region 49001
Tssr49002 5 129204327 to 129204332 5 + TSS region transcription start site region 49002
D5Mit427 5 129212105 to 129212215 110 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 427
Tssr49003 5 129234182 to 129234186 4 + TSS region transcription start site region 49003
Tssr49004 5 129235034 to 129235038 4 + TSS region transcription start site region 49004
D5Mit339 5 129242998 to 129243112 114 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 339
Cpgi16671 5 129264498 to 129264667 169 CpG island CpG island 16671
Gm34145 5 129306596 to 129308013 1417 - lncRNA gene predicted gene, 34145
Tssr49005 5 129363543 to 129363581 38 + TSS region transcription start site region 49005
Gm43001 5 129363562 to 129364721 1159 + lincRNA gene predicted gene 43001
Gm34468 5 129493231 to 129497417 4186 + lncRNA gene predicted gene, 34468
Gm40333 5 129493873 to 129494379 506 - lncRNA gene predicted gene, 40333
Gm40332 5 129500250 to 129501163 913 - lncRNA gene predicted gene, 40332
Cpgi16672 5 129500747 to 129502293 1546 CpG island CpG island 16672
Tssr49006 5 129501223 to 129501253 30 + TSS region transcription start site region 49006
Sfswap 5 129501231 to 129571384 70153 + protein coding gene splicing factor SWAP
Tssr49007 5 129511179 to 129511182 3 + TSS region transcription start site region 49007
D5Mit30 5 129555399 to 129555542 143 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 30
Gm42979 5 129556147 to 129558374 2227 + unclassified gene predicted gene 42979
Cpgi16673 5 129583533 to 129585598 2065 CpG island CpG island 16673
Mmp17 5 129584169 to 129611099 26930 + protein coding gene matrix metallopeptidase 17
Tssr49008 5 129584173 to 129584232 59 + TSS region transcription start site region 49008
Cpgi16674 5 129586268 to 129586606 338 CpG island CpG island 16674
Gm6139 5 129622990 to 129623871 881 - pseudogene predicted gene 6139
Gm18390 5 129634262 to 129640299 6037 + pseudogene predicted gene, 18390
Zfp11 5 129654595 to 129670088 15493 - protein coding gene zinc finger protein 11
Cpgi16675 5 129669793 to 129670425 632 CpG island CpG island 16675
Tssr53484 5 129670050 to 129670062 12 - TSS region transcription start site region 53484
Tssr53485 5 129670074 to 129670100 26 - TSS region transcription start site region 53485
Tssr53486 5 129670103 to 129670115 12 - TSS region transcription start site region 53486
Tssr53487 5 129682320 to 129682323 3 - TSS region transcription start site region 53487
Sept14 5 129683391 to 129708511 25120 - protein coding gene septin 14
Tssr1646 5 129704950 to 129704953 3 - TSS region transcription start site region 1646
Tssr53488 5 129704964 to 129704989 25 - TSS region transcription start site region 53488
Cpgi16676 5 129715362 to 129715850 488 CpG island CpG island 16676
Mrps17 5 129715441 to 129718712 3271 + protein coding gene mitochondrial ribosomal protein S17
Tssr49009 5 129715488 to 129715539 51 + TSS region transcription start site region 49009
Cpgi16677 5 129724735 to 129725959 1224 CpG island CpG island 16677
Nipsnap2 5 129725063 to 129758327 33264 + protein coding gene nipsnap homolog 2
Tssr49010 5 129725081 to 129725143 62 + TSS region transcription start site region 49010
Tssr49011 5 129727043 to 129727055 12 + TSS region transcription start site region 49011
Gm15903 5 129727046 to 129731689 4643 + sense intronic lncRNA gene predicted gene 15903
Cpgi16678 5 129730375 to 129730548 173 CpG island CpG island 16678
Tssr49012 5 129747017 to 129747037 20 + TSS region transcription start site region 49012
Tssr49013 5 129755681 to 129755715 34 + TSS region transcription start site region 49013
Tssr49014 5 129757631 to 129757635 4 + TSS region transcription start site region 49014
Psph 5 129765558 to 129787253 21695 - protein coding gene phosphoserine phosphatase
Cpgi16679 5 129778858 to 129779440 582 CpG island CpG island 16679
Tssr53489 5 129779119 to 129779131 12 - TSS region transcription start site region 53489
Tssr53490 5 129779175 to 129779186 11 - TSS region transcription start site region 53490
Tssr53491 5 129779204 to 129779283 79 - TSS region transcription start site region 53491
Cpgi16680 5 129786969 to 129787811 842 CpG island CpG island 16680
Tssr49015 5 129786990 to 129787058 68 + TSS region transcription start site region 49015
Tssr53492 5 129787158 to 129787173 15 - TSS region transcription start site region 53492
Tssr53493 5 129787175 to 129787259 84 - TSS region transcription start site region 53493
Cct6a 5 129787356 to 129846443 59087 + protein coding gene chaperonin containing Tcp1, subunit 6a (zeta)
Tssr49016 5 129787365 to 129787388 23 + TSS region transcription start site region 49016
Tssr49017 5 129787390 to 129787413 23 + TSS region transcription start site region 49017
Gm23245 5 129789539 to 129789673 134 + snoRNA gene predicted gene, 23245
Tssr49018 5 129791800 to 129791812 12 + TSS region transcription start site region 49018