Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:125290253-125391420

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scarb1 5 125277087 to 125341094 64007 - protein coding gene scavenger receptor class B, member 1
Tssr48921 5 125294062 to 125294068 6 + TSS region transcription start site region 48921
Tssr53423 5 125294062 to 125294080 18 - TSS region transcription start site region 53423
Tssr53424 5 125294107 to 125294136 29 - TSS region transcription start site region 53424
Tssr53425 5 125298686 to 125298725 39 - TSS region transcription start site region 53425
Tssr48922 5 125300409 to 125300427 18 + TSS region transcription start site region 48922
Tssr53426 5 125300415 to 125300427 12 - TSS region transcription start site region 53426
Tssr53427 5 125300530 to 125300540 10 - TSS region transcription start site region 53427
Tssr53428 5 125303195 to 125303222 27 - TSS region transcription start site region 53428
Gm32701 5 125303232 to 125312588 9356 + lncRNA gene predicted gene, 32701
Tssr48923 5 125303303 to 125303314 11 + TSS region transcription start site region 48923
Tssr1637 5 125304232 to 125304249 17 + TSS region transcription start site region 1637
Tssr53429 5 125304291 to 125304319 28 - TSS region transcription start site region 53429
Cpgi16639 5 125304433 to 125304778 345 CpG island CpG island 16639
Tssr53430 5 125304476 to 125304485 9 - TSS region transcription start site region 53430
Tssr48924 5 125305867 to 125305878 11 + TSS region transcription start site region 48924
Tssr53431 5 125312244 to 125312252 8 - TSS region transcription start site region 53431
Gm42633 5 125318681 to 125321444 2763 - unclassified gene predicted gene 42633
Tssr53432 5 125326335 to 125326385 50 - TSS region transcription start site region 53432
Tssr53433 5 125327691 to 125327740 49 - TSS region transcription start site region 53433
Cpgi16640 5 125340253 to 125341420 1167 CpG island CpG island 16640
Tssr53434 5 125341011 to 125341027 16 - TSS region transcription start site region 53434
Tssr53435 5 125341043 to 125341112 69 - TSS region transcription start site region 53435
Gm40323 5 125361175 to 125370760 9585 + lincRNA gene predicted gene, 40323
D5Mit426 5 125369034 to 125369154 120 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 426
Gm40324 5 125374816 to 125379769 4953 + lncRNA gene predicted gene, 40324
Ubc 5 125385965 to 125390017 4052 - protein coding gene ubiquitin C
Tssr48925 5 125385976 to 125385979 3 + TSS region transcription start site region 48925
Tssr53436 5 125388869 to 125388872 3 - TSS region transcription start site region 53436
Cpgi16641 5 125389089 to 125390292 1203 CpG island CpG island 16641
Tssr53437 5 125389150 to 125389170 20 - TSS region transcription start site region 53437
Tssr53438 5 125389177 to 125389208 31 - TSS region transcription start site region 53438
Tssr53439 5 125389215 to 125389222 7 - TSS region transcription start site region 53439
Tssr48926 5 125389268 to 125389273 5 + TSS region transcription start site region 48926
Tssr48927 5 125389284 to 125389327 43 + TSS region transcription start site region 48927
Gm10382 5 125389322 to 125390554 1232 + protein coding gene predicted gene 10382
Tssr48928 5 125389328 to 125389339 11 + TSS region transcription start site region 48928
Tssr48929 5 125389340 to 125389357 17 + TSS region transcription start site region 48929
Tssr48930 5 125389486 to 125389493 7 + TSS region transcription start site region 48930
Tssr53440 5 125389555 to 125389583 28 - TSS region transcription start site region 53440
Tssr53441 5 125389751 to 125389756 5 - TSS region transcription start site region 53441
Tssr1638 5 125389844 to 125389869 25 + TSS region transcription start site region 1638
Tssr53442 5 125389915 to 125390055 140 - TSS region transcription start site region 53442
Tssr53443 5 125390101 to 125390114 13 - TSS region transcription start site region 53443
Tssr53444 5 125390176 to 125390222 46 - TSS region transcription start site region 53444
Tssr48931 5 125390371 to 125390407 36 + TSS region transcription start site region 48931