Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:123243979-123445849

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49 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
Psmd9 5 123228190 to 123250126 21936 + protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Tssr1628 5 123248697 to 123248728 31 + TSS region transcription start site region 1628
Cpgi16581 5 123251928 to 123252269 341 CpG island CpG island 16581
Gm42025 5 123252015 to 123253852 1837 + lncRNA gene predicted gene, 42025
Tssr48777 5 123252087 to 123252136 49 + TSS region transcription start site region 48777
Tssr48778 5 123253666 to 123253692 26 + TSS region transcription start site region 48778
Wdr66 5 123253856 to 123327484 73628 + protein coding gene WD repeat domain 66
Rpl35a-ps6 5 123255481 to 123255813 332 - pseudogene ribosomal protein L35A, pseudogene 6
Tssr48779 5 123273748 to 123273751 3 + TSS region transcription start site region 48779
D5Mit137 5 123283604 to 123283753 149 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 137
Gm15857 5 123293638 to 123310324 16686 - antisense lncRNA gene predicted gene 15857
Tssr48780 5 123302402 to 123302411 9 + TSS region transcription start site region 48780
Tssr48781 5 123302413 to 123302426 13 + TSS region transcription start site region 48781
Tssr48782 5 123302497 to 123302508 11 + TSS region transcription start site region 48782
Tssr53236 5 123310349 to 123310360 11 - TSS region transcription start site region 53236
Tssr48783 5 123310499 to 123310522 23 + TSS region transcription start site region 48783
Tssr48784 5 123310533 to 123310544 11 + TSS region transcription start site region 48784
Gm15860 5 123334313 to 123345138 10825 - antisense lncRNA gene predicted gene 15860
Tssr48785 5 123343956 to 123343970 14 + TSS region transcription start site region 48785
Cpgi16582 5 123343979 to 123345849 1870 CpG island CpG island 16582
Tssr48786 5 123344336 to 123344347 11 + TSS region transcription start site region 48786
Tssr48787 5 123344440 to 123344576 136 + TSS region transcription start site region 48787
Bcl7a 5 123344448 to 123374083 29635 + protein coding gene B cell CLL/lymphoma 7A
Tssr48788 5 123344582 to 123344629 47 + TSS region transcription start site region 48788
Tssr48789 5 123344666 to 123344675 9 + TSS region transcription start site region 48789
Tssr1629 5 123344929 to 123344933 4 + TSS region transcription start site region 1629
Tssr53237 5 123345855 to 123345860 5 - TSS region transcription start site region 53237
Gm23458 5 123360832 to 123361000 168 + snRNA gene predicted gene, 23458
5830487J09Rik 5 123366472 to 123368919 2447 + unclassified gene RIKEN cDNA 5830487J09 gene
Cpgi16583 5 123373244 to 123373606 362 CpG island CpG island 16583
Cpgi16584 5 123381941 to 123382165 224 CpG island CpG island 16584
Gm15747 5 123393649 to 123397957 4308 - antisense lncRNA gene predicted gene 15747
Cpgi16585 5 123394392 to 123395608 1216 CpG island CpG island 16585
Tssr53238 5 123394635 to 123394638 3 - TSS region transcription start site region 53238
Tssr48790 5 123394730 to 123394739 9 + TSS region transcription start site region 48790
Tssr48791 5 123394782 to 123394826 44 + TSS region transcription start site region 48791
Mlxip 5 123394798 to 123457932 63134 + protein coding gene MLX interacting protein
Gm42907 5 123397240 to 123399387 2147 + unclassified gene predicted gene 42907
Tssr53239 5 123397956 to 123397991 35 - TSS region transcription start site region 53239
Gm42908 5 123401072 to 123401941 869 + unclassified gene predicted gene 42908
Tssr48792 5 123401074 to 123401084 10 + TSS region transcription start site region 48792
D5Mit413 5 123402149 to 123402297 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 413
Gm43813 5 123406487 to 123411864 5377 + unclassified non-coding RNA gene predicted gene 43813
D5Mit65 5 123411936 to 123412074 138 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 65
Tssr48793 5 123414938 to 123414945 7 + TSS region transcription start site region 48793
Tssr48794 5 123429049 to 123429055 6 + TSS region transcription start site region 48794
Tssr48795 5 123442290 to 123442304 14 + TSS region transcription start site region 48795
Tssr48796 5 123445797 to 123445812 15 + TSS region transcription start site region 48796