Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122511170-122999409

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700040P09Rik 5 122513209 to 122516582 3373 + lncRNA gene RIKEN cDNA 1700040P09 gene
Tssr48702 5 122513994 to 122514023 29 + TSS region transcription start site region 48702
Tssr53138 5 122520806 to 122520810 4 - TSS region transcription start site region 53138
Tssr48703 5 122525436 to 122525469 33 + TSS region transcription start site region 48703
Ift81 5 122550204 to 122614518 64314 - protein coding gene intraflagellar transport 81
Tssr53139 5 122560703 to 122560716 13 - TSS region transcription start site region 53139
Tssr53140 5 122560738 to 122560755 17 - TSS region transcription start site region 53140
Tssr53141 5 122560768 to 122560777 9 - TSS region transcription start site region 53141
Tssr53142 5 122560805 to 122560812 7 - TSS region transcription start site region 53142
Tssr53143 5 122560835 to 122560846 11 - TSS region transcription start site region 53143
Gm43541 5 122567524 to 122568104 580 - unclassified gene predicted gene 43541
Gm18941 5 122579883 to 122580621 738 + pseudogene predicted gene, 18941
Gm43301 5 122581469 to 122584853 3384 + antisense lncRNA gene predicted gene 43301
Cpgi16554 5 122613875 to 122614776 901 CpG island CpG island 16554
Tssr53144 5 122614486 to 122614544 58 - TSS region transcription start site region 53144
Tssr1627 5 122622414 to 122622423 9 - TSS region transcription start site region 1627
Gm32988 5 122624102 to 122628283 4181 + lncRNA gene predicted gene, 32988
Tssr48704 5 122643878 to 122643984 106 + TSS region transcription start site region 48704
P2rx7 5 122643911 to 122691432 47521 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 7
Cpgi16555 5 122644047 to 122644288 241 CpG island CpG island 16555
Tssr53145 5 122647553 to 122647578 25 - TSS region transcription start site region 53145
Tssr48705 5 122648334 to 122648346 12 + TSS region transcription start site region 48705
Tssr48706 5 122650376 to 122650393 17 + TSS region transcription start site region 48706
Tssr48707 5 122650405 to 122650412 7 + TSS region transcription start site region 48707
Tssr48708 5 122655591 to 122655595 4 + TSS region transcription start site region 48708
Mir8115 5 122682597 to 122682715 118 + miRNA gene microRNA 8115
Tssr48709 5 122682891 to 122682911 20 + TSS region transcription start site region 48709
Gm10064 5 122697202 to 122697600 398 - pseudogene predicted gene 10064
Cpgi16556 5 122707187 to 122708156 969 CpG island CpG island 16556
Tssr53146 5 122707417 to 122707445 28 - TSS region transcription start site region 53146
P2rx4 5 122707544 to 122729738 22194 + protein coding gene purinergic receptor P2X, ligand-gated ion channel 4
Tssr48710 5 122707546 to 122707627 81 + TSS region transcription start site region 48710
Tssr48711 5 122707959 to 122707988 29 + TSS region transcription start site region 48711
Tssr48712 5 122718310 to 122718324 14 + TSS region transcription start site region 48712
Tssr48713 5 122719925 to 122719937 12 + TSS region transcription start site region 48713
Tssr48714 5 122720284 to 122720298 14 + TSS region transcription start site region 48714
Tssr48715 5 122720341 to 122720353 12 + TSS region transcription start site region 48715
Tssr48716 5 122720361 to 122720394 33 + TSS region transcription start site region 48716
Tssr48717 5 122721628 to 122721644 16 + TSS region transcription start site region 48717
Tssr48718 5 122721791 to 122721812 21 + TSS region transcription start site region 48718
Tssr48719 5 122724601 to 122724621 20 + TSS region transcription start site region 48719
Tssr48720 5 122724984 to 122725010 26 + TSS region transcription start site region 48720
Cpgi16557 5 122725166 to 122725382 216 CpG island CpG island 16557
Camkk2 5 122731170 to 122779409 48239 - protein coding gene calcium/calmodulin-dependent protein kinase kinase 2, beta
Tssr53147 5 122744929 to 122744948 19 - TSS region transcription start site region 53147
Cpgi16558 5 122763762 to 122764091 329 CpG island CpG island 16558
Tssr53148 5 122763998 to 122764013 15 - TSS region transcription start site region 53148
Tssr53149 5 122771403 to 122771406 3 - TSS region transcription start site region 53149
Cpgi16559 5 122778502 to 122779870 1368 CpG island CpG island 16559
Tssr53150 5 122779278 to 122779434 156 - TSS region transcription start site region 53150
Tssr53151 5 122779449 to 122779463 14 - TSS region transcription start site region 53151
Gm43684 5 122779525 to 122786097 6572 + unclassified gene predicted gene 43684
Tssr53152 5 122779616 to 122779676 60 - TSS region transcription start site region 53152
Anapc5 5 122787459 to 122821339 33880 - protein coding gene anaphase-promoting complex subunit 5
Cpgi16560 5 122820839 to 122821460 621 CpG island CpG island 16560
Tssr48721 5 122820998 to 122821009 11 + TSS region transcription start site region 48721
Tssr53153 5 122821258 to 122821292 34 - TSS region transcription start site region 53153
Tssr53154 5 122821298 to 122821315 17 - TSS region transcription start site region 53154
Gm33044 5 122849628 to 122850136 508 - lncRNA gene predicted gene, 33044
Cpgi16561 5 122849792 to 122850923 1131 CpG island CpG island 16561
Tssr53155 5 122849872 to 122849890 18 - TSS region transcription start site region 53155
Tssr48722 5 122850135 to 122850142 7 + TSS region transcription start site region 48722
Tssr48723 5 122850154 to 122850165 11 + TSS region transcription start site region 48723
Rnf34 5 122850162 to 122868945 18783 + protein coding gene ring finger protein 34
Tssr48724 5 122850167 to 122850178 11 + TSS region transcription start site region 48724
Tssr48725 5 122850186 to 122850198 12 + TSS region transcription start site region 48725
Tssr48726 5 122850199 to 122850214 15 + TSS region transcription start site region 48726
Kdm2b 5 122870664 to 122989162 118498 - protein coding gene lysine (K)-specific demethylase 2B
Cpgi16562 5 122888523 to 122888756 233 CpG island CpG island 16562
Tssr53156 5 122899109 to 122899113 4 - TSS region transcription start site region 53156
Cpgi16563 5 122899242 to 122901264 2022 CpG island CpG island 16563
Tssr53157 5 122900267 to 122900377 110 - TSS region transcription start site region 53157
Tssr53158 5 122901698 to 122901720 22 - TSS region transcription start site region 53158
Gm43411 5 122906822 to 122908400 1578 - unclassified gene predicted gene 43411
Tssr53159 5 122915035 to 122915041 6 - TSS region transcription start site region 53159
Tssr53160 5 122922088 to 122922103 15 - TSS region transcription start site region 53160
Gm33118 5 122942237 to 122952325 10088 + lncRNA gene predicted gene, 33118
Tssr48727 5 122942598 to 122942612 14 + TSS region transcription start site region 48727
Tssr53161 5 122949157 to 122949194 37 - TSS region transcription start site region 53161
Tssr53162 5 122949200 to 122949210 10 - TSS region transcription start site region 53162
Tssr53163 5 122949233 to 122949248 15 - TSS region transcription start site region 53163
Tssr48728 5 122949511 to 122949554 43 + TSS region transcription start site region 48728
Cpgi16564 5 122951556 to 122952738 1182 CpG island CpG island 16564
Tssr53164 5 122951824 to 122951860 36 - TSS region transcription start site region 53164
Tssr53165 5 122952192 to 122952202 10 - TSS region transcription start site region 53165
Tssr53166 5 122952685 to 122952689 4 - TSS region transcription start site region 53166
Tssr53167 5 122984996 to 122984997 1 - TSS region transcription start site region 53167
Cpgi16565 5 122987358 to 122988729 1371 CpG island CpG island 16565
Tssr53168 5 122987401 to 122987447 46 - TSS region transcription start site region 53168
Tssr48729 5 122987580 to 122987612 32 + TSS region transcription start site region 48729
Gm44574 5 122987683 to 123012874 25191 - unclassified non-coding RNA gene predicted gene 44574
Tssr53169 5 122988487 to 122988526 39 - TSS region transcription start site region 53169
Tssr53170 5 122988683 to 122988705 22 - TSS region transcription start site region 53170
Tssr53171 5 122989043 to 122989080 37 - TSS region transcription start site region 53171
Cpgi16566 5 122989062 to 122989533 471 CpG island CpG island 16566
Tssr53172 5 122989086 to 122989111 25 - TSS region transcription start site region 53172
Tssr48730 5 122989242 to 122989252 10 + TSS region transcription start site region 48730
Tssr53173 5 122989260 to 122989280 20 - TSS region transcription start site region 53173
Tssr48731 5 122989265 to 122989281 16 + TSS region transcription start site region 48731
Tssr53174 5 122989283 to 122989338 55 - TSS region transcription start site region 53174
Tssr48732 5 122989290 to 122989315 25 + TSS region transcription start site region 48732
Tssr48733 5 122989348 to 122989366 18 + TSS region transcription start site region 48733
A930024E05Rik 5 122989354 to 122998345 8991 + antisense lncRNA gene RIKEN cDNA A930024E05 gene
Tssr48734 5 122989575 to 122989612 37 + TSS region transcription start site region 48734
Tssr48735 5 122989718 to 122989739 21 + TSS region transcription start site region 48735
Tssr48736 5 122989744 to 122989762 18 + TSS region transcription start site region 48736
Tssr48737 5 122989918 to 122989943 25 + TSS region transcription start site region 48737
Tssr53175 5 122990285 to 122990290 5 - TSS region transcription start site region 53175
Tssr53176 5 122990404 to 122990407 3 - TSS region transcription start site region 53176
Tssr53177 5 122990460 to 122990463 3 - TSS region transcription start site region 53177
Tssr53178 5 122990477 to 122990495 18 - TSS region transcription start site region 53178
Tssr53179 5 122990518 to 122990529 11 - TSS region transcription start site region 53179
Tssr53180 5 122990533 to 122990573 40 - TSS region transcription start site region 53180
Tssr48738 5 122990758 to 122990769 11 + TSS region transcription start site region 48738
Tssr48739 5 122990775 to 122990780 5 + TSS region transcription start site region 48739
Tssr48740 5 122990790 to 122990825 35 + TSS region transcription start site region 48740
Tssr48741 5 122990855 to 122990864 9 + TSS region transcription start site region 48741
Tssr53181 5 122994441 to 122994455 14 - TSS region transcription start site region 53181
Tssr48742 5 122995099 to 122995102 3 + TSS region transcription start site region 48742