Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122485376-122815393

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Atp2a2 5 122453513 to 122502225 48712 - protein coding gene ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
Tssr53120 5 122486288 to 122486309 21 - TSS region transcription start site region 53120
Tssr48694 5 122489236 to 122489250 14 + TSS region transcription start site region 48694
Tssr53121 5 122489313 to 122489326 13 - TSS region transcription start site region 53121
Tssr53122 5 122491707 to 122491739 32 - TSS region transcription start site region 53122
Tssr48695 5 122491733 to 122491740 7 + TSS region transcription start site region 48695
Tssr48696 5 122491741 to 122491763 22 + TSS region transcription start site region 48696
Tssr53123 5 122491752 to 122491767 15 - TSS region transcription start site region 53123
Gm43360 5 122492022 to 122494908 2886 - unclassified gene predicted gene 43360
Gm43361 5 122496159 to 122500848 4689 + unclassified gene predicted gene 43361
Tssr53124 5 122500332 to 122500341 9 - TSS region transcription start site region 53124
Tssr53125 5 122500364 to 122500375 11 - TSS region transcription start site region 53125
Tssr48697 5 122500726 to 122500735 9 + TSS region transcription start site region 48697
Tssr53126 5 122500824 to 122500833 9 - TSS region transcription start site region 53126
Tssr1626 5 122500929 to 122500931 2 + TSS region transcription start site region 1626
Cpgi16553 5 122501063 to 122503058 1995 CpG island CpG island 16553
Tssr53127 5 122501215 to 122501223 8 - TSS region transcription start site region 53127
Tssr53128 5 122501250 to 122501265 15 - TSS region transcription start site region 53128
Tssr53129 5 122501271 to 122501281 10 - TSS region transcription start site region 53129
Tssr48698 5 122501560 to 122501613 53 + TSS region transcription start site region 48698
Tssr48699 5 122501708 to 122501735 27 + TSS region transcription start site region 48699
Tssr53130 5 122501777 to 122501788 11 - TSS region transcription start site region 53130
Tssr48700 5 122501781 to 122501810 29 + TSS region transcription start site region 48700
Tssr53131 5 122502136 to 122502145 9 - TSS region transcription start site region 53131
Tssr53132 5 122502162 to 122502176 14 - TSS region transcription start site region 53132
Tssr53133 5 122502192 to 122502244 52 - TSS region transcription start site region 53133
Tssr53134 5 122502267 to 122502278 11 - TSS region transcription start site region 53134
Tssr53135 5 122502283 to 122502294 11 - TSS region transcription start site region 53135
Tssr48701 5 122502466 to 122502482 16 + TSS region transcription start site region 48701
Tssr53136 5 122502627 to 122502654 27 - TSS region transcription start site region 53136
Tssr53137 5 122502731 to 122502742 11 - TSS region transcription start site region 53137
Gm22965 5 122506789 to 122506889 100 + snRNA gene predicted gene, 22965
1700040P09Rik 5 122513209 to 122516582 3373 + lncRNA gene RIKEN cDNA 1700040P09 gene
Tssr48702 5 122513994 to 122514023 29 + TSS region transcription start site region 48702
Tssr53138 5 122520806 to 122520810 4 - TSS region transcription start site region 53138
Tssr48703 5 122525436 to 122525469 33 + TSS region transcription start site region 48703
Ift81 5 122550204 to 122614518 64314 - protein coding gene intraflagellar transport 81
Tssr53139 5 122560703 to 122560716 13 - TSS region transcription start site region 53139
Tssr53140 5 122560738 to 122560755 17 - TSS region transcription start site region 53140
Tssr53141 5 122560768 to 122560777 9 - TSS region transcription start site region 53141
Tssr53142 5 122560805 to 122560812 7 - TSS region transcription start site region 53142
Tssr53143 5 122560835 to 122560846 11 - TSS region transcription start site region 53143
Gm43541 5 122567524 to 122568104 580 - unclassified gene predicted gene 43541
Gm18941 5 122579883 to 122580621 738 + pseudogene predicted gene, 18941
Gm43301 5 122581469 to 122584853 3384 + antisense lncRNA gene predicted gene 43301
Cpgi16554 5 122613875 to 122614776 901 CpG island CpG island 16554
Tssr53144 5 122614486 to 122614544 58 - TSS region transcription start site region 53144
Tssr1627 5 122622414 to 122622423 9 - TSS region transcription start site region 1627
Gm32988 5 122624102 to 122628283 4181 + lncRNA gene predicted gene, 32988
Tssr48704 5 122643878 to 122643984 106 + TSS region transcription start site region 48704
P2rx7 5 122643911 to 122691432 47521 + protein coding gene purinergic receptor P2X, ligand-gated ion channel, 7
Cpgi16555 5 122644047 to 122644288 241 CpG island CpG island 16555
Tssr53145 5 122647553 to 122647578 25 - TSS region transcription start site region 53145
Tssr48705 5 122648334 to 122648346 12 + TSS region transcription start site region 48705
Tssr48706 5 122650376 to 122650393 17 + TSS region transcription start site region 48706
Tssr48707 5 122650405 to 122650412 7 + TSS region transcription start site region 48707
Tssr48708 5 122655591 to 122655595 4 + TSS region transcription start site region 48708
Mir8115 5 122682597 to 122682715 118 + miRNA gene microRNA 8115
Tssr48709 5 122682891 to 122682911 20 + TSS region transcription start site region 48709
Gm10064 5 122697202 to 122697600 398 - pseudogene predicted gene 10064
Cpgi16556 5 122707187 to 122708156 969 CpG island CpG island 16556
Tssr53146 5 122707417 to 122707445 28 - TSS region transcription start site region 53146
P2rx4 5 122707544 to 122729738 22194 + protein coding gene purinergic receptor P2X, ligand-gated ion channel 4
Tssr48710 5 122707546 to 122707627 81 + TSS region transcription start site region 48710
Tssr48711 5 122707959 to 122707988 29 + TSS region transcription start site region 48711
Tssr48712 5 122718310 to 122718324 14 + TSS region transcription start site region 48712
Tssr48713 5 122719925 to 122719937 12 + TSS region transcription start site region 48713
Tssr48714 5 122720284 to 122720298 14 + TSS region transcription start site region 48714
Tssr48715 5 122720341 to 122720353 12 + TSS region transcription start site region 48715
Tssr48716 5 122720361 to 122720394 33 + TSS region transcription start site region 48716
Tssr48717 5 122721628 to 122721644 16 + TSS region transcription start site region 48717
Tssr48718 5 122721791 to 122721812 21 + TSS region transcription start site region 48718
Tssr48719 5 122724601 to 122724621 20 + TSS region transcription start site region 48719
Tssr48720 5 122724984 to 122725010 26 + TSS region transcription start site region 48720
Cpgi16557 5 122725166 to 122725382 216 CpG island CpG island 16557
Camkk2 5 122731170 to 122779409 48239 - protein coding gene calcium/calmodulin-dependent protein kinase kinase 2, beta
Tssr53147 5 122744929 to 122744948 19 - TSS region transcription start site region 53147
Cpgi16558 5 122763762 to 122764091 329 CpG island CpG island 16558
Tssr53148 5 122763998 to 122764013 15 - TSS region transcription start site region 53148
Tssr53149 5 122771403 to 122771406 3 - TSS region transcription start site region 53149
Cpgi16559 5 122778502 to 122779870 1368 CpG island CpG island 16559
Tssr53150 5 122779278 to 122779434 156 - TSS region transcription start site region 53150
Tssr53151 5 122779449 to 122779463 14 - TSS region transcription start site region 53151
Gm43684 5 122779525 to 122786097 6572 + unclassified gene predicted gene 43684
Tssr53152 5 122779616 to 122779676 60 - TSS region transcription start site region 53152
Anapc5 5 122787459 to 122821339 33880 - protein coding gene anaphase-promoting complex subunit 5