Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:122224151-122394173

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hvcn1 5 122206807 to 122242297 35490 + protein coding gene hydrogen voltage-gated channel 1
Tssr48655 5 122224412 to 122224417 5 + TSS region transcription start site region 48655
Tssr48656 5 122226714 to 122226734 20 + TSS region transcription start site region 48656
Tssr48657 5 122226855 to 122226866 11 + TSS region transcription start site region 48657
Tssr48658 5 122227128 to 122227140 12 + TSS region transcription start site region 48658
Tssr48659 5 122231027 to 122231040 13 + TSS region transcription start site region 48659
Tssr48660 5 122232260 to 122232282 22 + TSS region transcription start site region 48660
Tssr48661 5 122232366 to 122232387 21 + TSS region transcription start site region 48661
Tssr48662 5 122233412 to 122233436 24 + TSS region transcription start site region 48662
Tssr48663 5 122233581 to 122233618 37 + TSS region transcription start site region 48663
Tssr53083 5 122234621 to 122234634 13 - TSS region transcription start site region 53083
Tssr53084 5 122234652 to 122234659 7 - TSS region transcription start site region 53084
Tssr48664 5 122235400 to 122235416 16 + TSS region transcription start site region 48664
4930565B19Rik 5 122237847 to 122240188 2341 unclassified gene RIKEN cDNA 4930565B19 gene
Tctn1 5 122239495 to 122264492 24997 - protein coding gene tectonic family member 1
Tssr48665 5 122240655 to 122240671 16 + TSS region transcription start site region 48665
Tssr48666 5 122240725 to 122240757 32 + TSS region transcription start site region 48666
Tssr48667 5 122240764 to 122240826 62 + TSS region transcription start site region 48667
Tssr53085 5 122240846 to 122240863 17 - TSS region transcription start site region 53085
Tssr53086 5 122240917 to 122240940 23 - TSS region transcription start site region 53086
Tssr48668 5 122240932 to 122241013 81 + TSS region transcription start site region 48668
Tssr48669 5 122241023 to 122241063 40 + TSS region transcription start site region 48669
Tssr48670 5 122241157 to 122241176 19 + TSS region transcription start site region 48670
Tssr53087 5 122241234 to 122241249 15 - TSS region transcription start site region 53087
Tssr53088 5 122241382 to 122241407 25 - TSS region transcription start site region 53088
Tssr53089 5 122246481 to 122246485 4 - TSS region transcription start site region 53089
Tssr53090 5 122248084 to 122248093 9 - TSS region transcription start site region 53090
Gm15481 5 122253002 to 122253540 538 + pseudogene predicted gene 15481
Tssr53091 5 122253580 to 122253584 4 - TSS region transcription start site region 53091
Cpgi16546 5 122264020 to 122264540 520 CpG island CpG island 16546
Tssr53092 5 122264378 to 122264455 77 - TSS region transcription start site region 53092
1700112N08Rik 5 122275323 to 122279719 4396 + lncRNA gene RIKEN cDNA 1700112N08 gene
Tssr48671 5 122275426 to 122275456 30 + TSS region transcription start site region 48671
Cpgi16547 5 122284203 to 122285598 1395 CpG island CpG island 16547
Tssr48672 5 122284372 to 122284397 25 + TSS region transcription start site region 48672
Pptc7 5 122284398 to 122324281 39883 + protein coding gene PTC7 protein phosphatase homolog
Gm15842 5 122302422 to 122303039 617 + pseudogene predicted gene 15842
Tssr48673 5 122309151 to 122309173 22 + TSS region transcription start site region 48673
Rad9b 5 122323223 to 122354233 31010 - protein coding gene RAD9 checkpoint clamp component B
Tssr53093 5 122323914 to 122323917 3 - TSS region transcription start site region 53093
Cpgi16548 5 122325087 to 122325277 190 CpG island CpG island 16548
Cpgi16549 5 122353879 to 122355144 1265 CpG island CpG island 16549
Tssr53094 5 122354161 to 122354237 76 - TSS region transcription start site region 53094
Tssr48674 5 122354356 to 122354359 3 + TSS region transcription start site region 48674
Tssr48675 5 122354361 to 122354368 7 + TSS region transcription start site region 48675
Vps29 5 122354377 to 122364975 10598 + protein coding gene VPS29 retromer complex component
Tssr48676 5 122354385 to 122354455 70 + TSS region transcription start site region 48676
Fam216a 5 122364584 to 122371963 7379 - protein coding gene family with sequence similarity 216, member A
D5Mit118 5 122366221 to 122366356 135 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 118
Cpgi16550 5 122371638 to 122372909 1271 CpG island CpG island 16550
Tssr48677 5 122371875 to 122371887 12 + TSS region transcription start site region 48677
Tssr53095 5 122371975 to 122371980 5 - TSS region transcription start site region 53095
Tssr53096 5 122371987 to 122371998 11 - TSS region transcription start site region 53096
Tssr53097 5 122372012 to 122372070 58 - TSS region transcription start site region 53097
Tssr53098 5 122372230 to 122372390 160 - TSS region transcription start site region 53098
Tssr48678 5 122372445 to 122372477 32 + TSS region transcription start site region 48678
Tssr48679 5 122372494 to 122372513 19 + TSS region transcription start site region 48679
Gpn3 5 122372508 to 122382771 10263 + protein coding gene GPN-loop GTPase 3
Tssr48680 5 122372515 to 122372604 89 + TSS region transcription start site region 48680
Tssr48681 5 122372608 to 122372623 15 + TSS region transcription start site region 48681
Gm42830 5 122377408 to 122377720 312 + unclassified gene predicted gene 42830
Gm32853 5 122380057 to 122394812 14755 - lncRNA gene predicted gene, 32853
Cpgi16551 5 122391714 to 122392713 999 CpG island CpG island 16551
Tssr53099 5 122391741 to 122391762 21 - TSS region transcription start site region 53099
Arpc3 5 122391878 to 122406181 14303 + protein coding gene actin related protein 2/3 complex, subunit 3
Tssr48682 5 122391890 to 122391928 38 + TSS region transcription start site region 48682
Tssr48683 5 122391942 to 122391958 16 + TSS region transcription start site region 48683
Tssr48684 5 122391959 to 122391960 1 + TSS region transcription start site region 48684
Tssr48685 5 122392270 to 122392274 4 + TSS region transcription start site region 48685