Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:121500378-121820397

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem116 5 121452709 to 121517910 65201 + protein coding gene transmembrane protein 116
Adam1b 5 121500097 to 121502980 2883 - protein coding gene a disintegrin and metallopeptidase domain 1b
Tssr53033 5 121503397 to 121503440 43 - TSS region transcription start site region 53033
4930477O15Rik 5 121503513 to 121504601 1088 + unclassified gene RIKEN cDNA 4930477O15 gene
Tssr48583 5 121506908 to 121506912 4 + TSS region transcription start site region 48583
Adam1a 5 121518604 to 121521695 3091 - protein coding gene a disintegrin and metallopeptidase domain 1a
Gm42878 5 121518613 to 121545482 26869 - protein coding gene predicted gene 42878
Tssr53034 5 121521560 to 121521563 3 - TSS region transcription start site region 53034
Tssr53035 5 121521573 to 121521599 26 - TSS region transcription start site region 53035
Mapkapk5 5 121525051 to 121545892 20841 - protein coding gene MAP kinase-activated protein kinase 5
Tssr48584 5 121525518 to 121525563 45 + TSS region transcription start site region 48584
Tssr53036 5 121527224 to 121527258 34 - TSS region transcription start site region 53036
Tssr53037 5 121527260 to 121527269 9 - TSS region transcription start site region 53037
Gm15547 5 121530563 to 121530895 332 - pseudogene predicted gene 15547
Cpgi16526 5 121544747 to 121546319 1572 CpG island CpG island 16526
Tssr53038 5 121545713 to 121545748 35 - TSS region transcription start site region 53038
Aldh2 5 121566027 to 121593824 27797 - protein coding gene aldehyde dehydrogenase 2, mitochondrial
Tssr48585 5 121567703 to 121567726 23 + TSS region transcription start site region 48585
Tssr53039 5 121567799 to 121567814 15 - TSS region transcription start site region 53039
Alpq7 5 121567876 to 121567876 0 QTL alcohol preference QTL 7
Tssr53040 5 121568989 to 121569002 13 - TSS region transcription start site region 53040
Tssr53041 5 121572114 to 121572125 11 - TSS region transcription start site region 53041
Tssr53042 5 121572709 to 121572720 11 - TSS region transcription start site region 53042
Tssr53043 5 121576008 to 121576035 27 - TSS region transcription start site region 53043
Cpgi16527 5 121593014 to 121593859 845 CpG island CpG island 16527
Tssr53044 5 121593482 to 121593493 11 - TSS region transcription start site region 53044
Tssr53045 5 121593552 to 121593603 51 - TSS region transcription start site region 53045
Gm42879 5 121593695 to 121595908 2213 + unclassified gene predicted gene 42879
Tssr53046 5 121593773 to 121593789 16 - TSS region transcription start site region 53046
Acad12 5 121598277 to 121618938 20661 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 12
Cpgi16528 5 121618653 to 121619503 850 CpG island CpG island 16528
Tssr53047 5 121618839 to 121618862 23 - TSS region transcription start site region 53047
Tssr53048 5 121618865 to 121618925 60 - TSS region transcription start site region 53048
Tssr48586 5 121619032 to 121619087 55 + TSS region transcription start site region 48586
Acad10 5 121621026 to 121660510 39484 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 10
Cpgi16529 5 121660119 to 121661387 1268 CpG island CpG island 16529
Tssr53049 5 121660378 to 121660397 19 - TSS region transcription start site region 53049
Tssr53050 5 121660410 to 121660419 9 - TSS region transcription start site region 53050
Tssr1624 5 121660442 to 121660476 34 - TSS region transcription start site region 1624
Tssr53051 5 121660477 to 121660519 42 - TSS region transcription start site region 53051
Tssr48587 5 121660528 to 121660631 103 + TSS region transcription start site region 48587
Brap 5 121660563 to 121687249 26686 + protein coding gene BRCA1 associated protein
Tssr48588 5 121660642 to 121660645 3 + TSS region transcription start site region 48588
Tssr48589 5 121660877 to 121660896 19 + TSS region transcription start site region 48589
Tssr53052 5 121673987 to 121673989 2 - TSS region transcription start site region 53052
Tssr48590 5 121686628 to 121686630 2 + TSS region transcription start site region 48590
Cpgi16530 5 121692506 to 121692714 208 CpG island CpG island 16530
1700064N11Rik 5 121710786 to 121711480 694 unclassified gene RIKEN cDNA 1700064N11 gene
Cpgi16531 5 121711029 to 121713322 2293 CpG island CpG island 16531
Tssr53053 5 121711455 to 121711479 24 - TSS region transcription start site region 53053
Atxn2 5 121711609 to 121814950 103341 + protein coding gene ataxin 2
Tssr48591 5 121711785 to 121711859 74 + TSS region transcription start site region 48591
Tssr48592 5 121711908 to 121711915 7 + TSS region transcription start site region 48592
Tssr48593 5 121712039 to 121712050 11 + TSS region transcription start site region 48593
Tssr48594 5 121712068 to 121712071 3 + TSS region transcription start site region 48594
Tssr48595 5 121712467 to 121712475 8 + TSS region transcription start site region 48595
Tssr48596 5 121714175 to 121714180 5 + TSS region transcription start site region 48596
Gm43571 5 121715109 to 121718206 3097 + unclassified gene predicted gene 43571
Tssr48597 5 121715127 to 121715131 4 + TSS region transcription start site region 48597
Gm16552 5 121717666 to 121727403 9737 - antisense lncRNA gene predicted gene 16552
Tssr48598 5 121738831 to 121738864 33 + TSS region transcription start site region 48598
Gm42866 5 121742417 to 121745720 3303 + unclassified gene predicted gene 42866
Tssr48599 5 121742440 to 121742446 6 + TSS region transcription start site region 48599
Tssr48600 5 121748169 to 121748173 4 + TSS region transcription start site region 48600
Tssr48601 5 121753055 to 121753059 4 + TSS region transcription start site region 48601
Tssr48602 5 121787319 to 121787342 23 + TSS region transcription start site region 48602
Tssr48603 5 121797712 to 121797725 13 + TSS region transcription start site region 48603
Sh2b3 5 121815488 to 121837646 22158 - protein coding gene SH2B adaptor protein 3
Mir7031 5 121819209 to 121819273 64 - miRNA gene microRNA 7031