Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119869485-120189486

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbx5 5 119832668 to 119885219 52551 + protein coding gene T-box 5
Tssr48490 5 119871487 to 119871500 13 + TSS region transcription start site region 48490
Tssr48491 5 119876578 to 119876589 11 + TSS region transcription start site region 48491
D5Mit424 5 119880432 to 119880564 132 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 424
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
D5Mit425 5 119880441 to 119880564 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 425
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27
Tssr1619 5 119881272 to 119881276 4 + TSS region transcription start site region 1619
Tssr48492 5 119881342 to 119881346 4 + TSS region transcription start site region 48492
Tssr48493 5 119881927 to 119881935 8 + TSS region transcription start site region 48493
Cpgi16476 5 119882981 to 119883467 486 CpG island CpG island 16476
Tssr48494 5 119884319 to 119884321 2 + TSS region transcription start site region 48494
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018
Gm42019 5 120028225 to 120031958 3733 - lncRNA gene predicted gene, 42019
Tssr1620 5 120029485 to 120029486 1 + TSS region transcription start site region 1620
n-R5s176 5 120064335 to 120064443 108 + rRNA gene nuclear encoded rRNA 5S 176
Tssr48497 5 120076668 to 120076670 2 + TSS region transcription start site region 48497
Cpgi16477 5 120084711 to 120084963 252 CpG island CpG island 16477
Cpgi16478 5 120088644 to 120088832 188 CpG island CpG island 16478
Cpgi16479 5 120116297 to 120116882 585 CpG island CpG island 16479
Tssr48498 5 120116480 to 120116525 45 + TSS region transcription start site region 48498
Rbm19 5 120116513 to 120198971 82458 + protein coding gene RNA binding motif protein 19
Tssr48499 5 120116526 to 120116551 25 + TSS region transcription start site region 48499
Gm10390 5 120121096 to 120139263 18167 - antisense lncRNA gene predicted gene 10390
Tssr52921 5 120139247 to 120139276 29 - TSS region transcription start site region 52921
Tssr52922 5 120139281 to 120139295 14 - TSS region transcription start site region 52922
Tssr48500 5 120145799 to 120145803 4 + TSS region transcription start site region 48500
Tssr48501 5 120172816 to 120172831 15 + TSS region transcription start site region 48501