Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:119691972-123527074

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999 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc33 5 104239005 to 120573921 16334916 QTL susceptibility to lung cancer 33
Cpgi16463 5 119749251 to 119749463 212 CpG island CpG island 16463
Gm42017 5 119784461 to 119786959 2498 - lncRNA gene predicted gene, 42017
Cpgi16464 5 119796504 to 119796983 479 CpG island CpG island 16464
Tssr48473 5 119796513 to 119796544 31 + TSS region transcription start site region 48473
Tssr48474 5 119796547 to 119796556 9 + TSS region transcription start site region 48474
Tssr48475 5 119796643 to 119796657 14 + TSS region transcription start site region 48475
Tssr48476 5 119796659 to 119796682 23 + TSS region transcription start site region 48476
Cpgi16465 5 119797712 to 119797981 269 CpG island CpG island 16465
Cpgi16466 5 119800504 to 119800864 360 CpG island CpG island 16466
Gm5563 5 119802679 to 119832028 29349 - lncRNA gene predicted gene 5563
Cpgi16467 5 119803162 to 119804880 1718 CpG island CpG island 16467
1700021F13Rik 5 119805329 to 119807869 2540 - lincRNA gene RIKEN cDNA 1700021F13 gene
Tssr52917 5 119806404 to 119806419 15 - TSS region transcription start site region 52917
Bbaa24 5 119806972 to 141714711 21907739 QTL B.burgdorferi-associated arthritis 24
Nidd7k 5 119806972 to 149423861 29616889 QTL Nidd7 on KK-A
Sluc33b 5 119806972 to 119807131 159 QTL susceptibility to lung cancer 33b
repro2 5 119806972 to 123412074 3605102 heritable phenotypic marker reproductive mutant 2, JAX Reproductive Mutagenesis Program
D5Mit431 5 119806972 to 119807087 115 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 431
D5Mit68 5 119806972 to 119807131 159 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 68
Tssr52918 5 119807631 to 119807632 1 - TSS region transcription start site region 52918
Tssr52919 5 119807650 to 119807666 16 - TSS region transcription start site region 52919
Gm43050 5 119828448 to 119831920 3472 - lincRNA gene predicted gene 43050
Cpgi16468 5 119831029 to 119831892 863 CpG island CpG island 16468
Tssr52920 5 119831980 to 119831992 12 - TSS region transcription start site region 52920
Tssr48477 5 119832084 to 119832097 13 + TSS region transcription start site region 48477
Tssr48478 5 119832102 to 119832127 25 + TSS region transcription start site region 48478
Cpgi16469 5 119832587 to 119832774 187 CpG island CpG island 16469
Tbx5 5 119832668 to 119885219 52551 + protein coding gene T-box 5
Tssr48479 5 119832682 to 119832692 10 + TSS region transcription start site region 48479
Tssr48480 5 119832702 to 119832715 13 + TSS region transcription start site region 48480
Tssr48481 5 119835095 to 119835104 9 + TSS region transcription start site region 48481
Tssr48482 5 119835115 to 119835118 3 + TSS region transcription start site region 48482
Tssr48483 5 119835121 to 119835132 11 + TSS region transcription start site region 48483
Tssr48484 5 119835135 to 119835151 16 + TSS region transcription start site region 48484
Tssr48485 5 119835152 to 119835167 15 + TSS region transcription start site region 48485
Tssr48486 5 119835170 to 119835176 6 + TSS region transcription start site region 48486
Cpgi16470 5 119835212 to 119835605 393 CpG island CpG island 16470
Tssr48487 5 119836697 to 119836727 30 + TSS region transcription start site region 48487
Cpgi16471 5 119836752 to 119837489 737 CpG island CpG island 16471
Tssr48488 5 119836789 to 119836806 17 + TSS region transcription start site region 48488
Tssr48489 5 119836859 to 119836879 20 + TSS region transcription start site region 48489
Cpgi16472 5 119839884 to 119840132 248 CpG island CpG island 16472
Cpgi16473 5 119841710 to 119841981 271 CpG island CpG island 16473
Cpgi16474 5 119844987 to 119845276 289 CpG island CpG island 16474
D5Mit367 5 119860020 to 119860124 104 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 367
Cpgi16475 5 119866815 to 119867516 701 CpG island CpG island 16475
Tssr48490 5 119871487 to 119871500 13 + TSS region transcription start site region 48490
Tssr48491 5 119876578 to 119876589 11 + TSS region transcription start site region 48491
D5Mit424 5 119880432 to 119880564 132 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 424
oar 5 119880432 to 125451502 5571070 heritable phenotypic marker oarleg
D5Mit425 5 119880441 to 119880564 123 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 425
Cia27 5 119880564 to 75154687 -44725877 QTL collagen induced arthritis QTL 27
Tssr1619 5 119881272 to 119881276 4 + TSS region transcription start site region 1619
Tssr48492 5 119881342 to 119881346 4 + TSS region transcription start site region 48492
Tssr48493 5 119881927 to 119881935 8 + TSS region transcription start site region 48493
Cpgi16476 5 119882981 to 119883467 486 CpG island CpG island 16476
Tssr48494 5 119884319 to 119884321 2 + TSS region transcription start site region 48494
Gm43269 5 119914938 to 119916846 1908 + lincRNA gene predicted gene 43269
Tssr48495 5 119947681 to 119947686 5 + TSS region transcription start site region 48495
Gm31773 5 119958627 to 119959145 518 - lncRNA gene predicted gene, 31773
Tssr48496 5 119959210 to 119959245 35 + TSS region transcription start site region 48496
Gm38554 5 119959243 to 119963380 4137 + lincRNA gene predicted gene, 38554
Gm42018 5 119978552 to 119981384 2832 + lncRNA gene predicted gene, 42018
Gm42019 5 120028225 to 120031958 3733 - lncRNA gene predicted gene, 42019
Tssr1620 5 120029485 to 120029486 1 + TSS region transcription start site region 1620
n-R5s176 5 120064335 to 120064443 108 + rRNA gene nuclear encoded rRNA 5S 176
Tssr48497 5 120076668 to 120076670 2 + TSS region transcription start site region 48497
Cpgi16477 5 120084711 to 120084963 252 CpG island CpG island 16477
Cpgi16478 5 120088644 to 120088832 188 CpG island CpG island 16478
Cpgi16479 5 120116297 to 120116882 585 CpG island CpG island 16479
Tssr48498 5 120116480 to 120116525 45 + TSS region transcription start site region 48498
Rbm19 5 120116513 to 120198971 82458 + protein coding gene RNA binding motif protein 19
Tssr48499 5 120116526 to 120116551 25 + TSS region transcription start site region 48499
Gm10390 5 120121096 to 120139263 18167 - antisense lncRNA gene predicted gene 10390
Tssr52921 5 120139247 to 120139276 29 - TSS region transcription start site region 52921
Tssr52922 5 120139281 to 120139295 14 - TSS region transcription start site region 52922
Tssr48500 5 120145799 to 120145803 4 + TSS region transcription start site region 48500
Tssr48501 5 120172816 to 120172831 15 + TSS region transcription start site region 48501
Cpgi16480 5 120211015 to 120211325 310 CpG island CpG island 16480
Gm31836 5 120222030 to 120235233 13203 - lncRNA gene predicted gene, 31836
D5Mit408 5 120231037 to 120231158 121 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 408
Cpgi16481 5 120241557 to 120241839 282 CpG island CpG island 16481
Cpgi16482 5 120251958 to 120252529 571 CpG island CpG island 16482
Gm42655 5 120255258 to 120256391 1133 + unclassified gene predicted gene 42655
Cpgi16483 5 120269409 to 120269883 474 CpG island CpG island 16483
Gm26474 5 120287726 to 120287847 121 + miRNA gene predicted gene, 26474
Cpgi16484 5 120301837 to 120302920 1083 CpG island CpG island 16484
Cpgi16485 5 120303751 to 120304429 678 CpG island CpG island 16485
Gm42654 5 120339500 to 120345968 6468 - lincRNA gene predicted gene 42654
Cpgi16486 5 120358058 to 120358473 415 CpG island CpG island 16486
Gm27199 5 120419659 to 120431767 12108 - antisense lncRNA gene predicted gene 27199
Gm31976 5 120423794 to 120431680 7886 - lncRNA gene predicted gene, 31976
Cpgi16487 5 120424106 to 120424396 290 CpG island CpG island 16487
Cpgi16488 5 120425682 to 120425847 165 CpG island CpG island 16488
Cpgi16489 5 120427407 to 120428449 1042 CpG island CpG island 16489
Cpgi16490 5 120430859 to 120432784 1925 CpG island CpG island 16490
Lhx5 5 120431699 to 120441223 9524 + protein coding gene LIM homeobox protein 5
Tssr52923 5 120431757 to 120431771 14 - TSS region transcription start site region 52923
Tssr48502 5 120431891 to 120431905 14 + TSS region transcription start site region 48502
Tssr48503 5 120431909 to 120431912 3 + TSS region transcription start site region 48503
Tssr48504 5 120431930 to 120431937 7 + TSS region transcription start site region 48504
Tssr48505 5 120431949 to 120431958 9 + TSS region transcription start site region 48505
Tssr48506 5 120431969 to 120431980 11 + TSS region transcription start site region 48506
Tssr48507 5 120433199 to 120433215 16 + TSS region transcription start site region 48507
Cpgi16491 5 120434355 to 120434730 375 CpG island CpG island 16491
Cpgi16492 5 120435131 to 120436678 1547 CpG island CpG island 16492
Cpgi16493 5 120437924 to 120438404 480 CpG island CpG island 16493
Cpgi16494 5 120439026 to 120439178 152 CpG island CpG island 16494
Cpgi16495 5 120439578 to 120440585 1007 CpG island CpG island 16495
Tssr48508 5 120440588 to 120440607 19 + TSS region transcription start site region 48508
Tssr48509 5 120441299 to 120441307 8 + TSS region transcription start site region 48509
Cpgi16496 5 120457775 to 120457928 153 CpG island CpG island 16496
Sdsl 5 120458186 to 120472810 14624 - protein coding gene serine dehydratase-like
Tssr52924 5 120467296 to 120467351 55 - TSS region transcription start site region 52924
Tssr52925 5 120472817 to 120472830 13 - TSS region transcription start site region 52925
Tssr48510 5 120476522 to 120476538 16 + TSS region transcription start site region 48510
Sds 5 120476547 to 120483932 7385 + protein coding gene serine dehydratase
Gm15690 5 120479842 to 120480903 1061 - antisense lncRNA gene predicted gene 15690
Cpgi16497 5 120481389 to 120481615 226 CpG island CpG island 16497
Plbd2 5 120483893 to 120503623 19730 - protein coding gene phospholipase B domain containing 2
Tssr52926 5 120485068 to 120485086 18 - TSS region transcription start site region 52926
Tssr52927 5 120486097 to 120486124 27 - TSS region transcription start site region 52927
Tssr52928 5 120494400 to 120494421 21 - TSS region transcription start site region 52928
Cpgi16498 5 120502875 to 120503706 831 CpG island CpG island 16498
Tssr52929 5 120503593 to 120503627 34 - TSS region transcription start site region 52929
Cpgi16499 5 120510999 to 120511584 585 CpG island CpG island 16499
Slc8b1 5 120511168 to 120534024 22856 + protein coding gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1
Tssr48511 5 120511173 to 120511211 38 + TSS region transcription start site region 48511
Tssr48512 5 120511213 to 120511246 33 + TSS region transcription start site region 48512
Tssr48513 5 120513102 to 120513123 21 + TSS region transcription start site region 48513
Tssr52930 5 120516497 to 120516523 26 - TSS region transcription start site region 52930
Tssr48514 5 120519709 to 120519752 43 + TSS region transcription start site region 48514
Tpcn1 5 120534153 to 120588673 54520 - protein coding gene two pore channel 1
Tssr52931 5 120543942 to 120543975 33 - TSS region transcription start site region 52931
Tssr52932 5 120548266 to 120548269 3 - TSS region transcription start site region 52932
Tssr52933 5 120548295 to 120548309 14 - TSS region transcription start site region 52933
Tssr52934 5 120548329 to 120548340 11 - TSS region transcription start site region 52934
2510016D11Rik 5 120552055 to 120553039 984 - unclassified gene RIKEN cDNA 2510016D11 gene
Tssr52935 5 120557795 to 120557824 29 - TSS region transcription start site region 52935
Tssr52936 5 120559753 to 120559756 3 - TSS region transcription start site region 52936
Tssr52937 5 120560245 to 120560295 50 - TSS region transcription start site region 52937
Tssr52938 5 120560352 to 120560372 20 - TSS region transcription start site region 52938
Tssr52939 5 120560373 to 120560402 29 - TSS region transcription start site region 52939
Tssr52940 5 120560404 to 120560413 9 - TSS region transcription start site region 52940
Tssr52941 5 120560416 to 120560436 20 - TSS region transcription start site region 52941
Tssr52942 5 120560902 to 120560932 30 - TSS region transcription start site region 52942
Tssr48515 5 120561036 to 120561081 45 + TSS region transcription start site region 48515
Tssr52943 5 120564726 to 120564741 15 - TSS region transcription start site region 52943
Cpgi16500 5 120567327 to 120567582 255 CpG island CpG island 16500
D5Mit159.1 5 120573618 to 120573743 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159.1
D5Mit159 5 120573731 to 120573921 190 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 159
Cpgi16501 5 120579261 to 120579449 188 CpG island CpG island 16501
Cpgi16502 5 120579747 to 120580037 290 CpG island CpG island 16502
Tssr48516 5 120587715 to 120587742 27 + TSS region transcription start site region 48516
Cpgi16503 5 120588113 to 120589224 1111 CpG island CpG island 16503
Tssr52944 5 120588615 to 120588651 36 - TSS region transcription start site region 52944
Tssr52945 5 120588662 to 120588669 7 - TSS region transcription start site region 52945
Tssr48517 5 120589003 to 120589019 16 + TSS region transcription start site region 48517
Iqcd 5 120589016 to 120607118 18102 + protein coding gene IQ motif containing D
Tssr48518 5 120589020 to 120589061 41 + TSS region transcription start site region 48518
Gm38700 5 120594305 to 120600028 5723 - lncRNA gene predicted gene, 38700
Gm38465 5 120602096 to 120606643 4547 - lncRNA gene predicted gene, 38465
Cpgi16504 5 120606563 to 120606863 300 CpG island CpG island 16504
Tssr52946 5 120606970 to 120606991 21 - TSS region transcription start site region 52946
Rita1 5 120609058 to 120612589 3531 - protein coding gene RBPJ interacting and tubulin associated 1
Cpgi16505 5 120612024 to 120613801 1777 CpG island CpG island 16505
Tssr52947 5 120612558 to 120612598 40 - TSS region transcription start site region 52947
Tssr48519 5 120613092 to 120613131 39 + TSS region transcription start site region 48519
Ddx54 5 120613107 to 120628592 15485 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
Tssr48520 5 120613143 to 120613152 9 + TSS region transcription start site region 48520
Tssr48521 5 120613388 to 120613390 2 + TSS region transcription start site region 48521
Tssr48522 5 120621311 to 120621318 7 + TSS region transcription start site region 48522
Tssr48523 5 120621356 to 120621397 41 + TSS region transcription start site region 48523
Tssr48524 5 120621414 to 120621436 22 + TSS region transcription start site region 48524
Tssr48525 5 120621442 to 120621463 21 + TSS region transcription start site region 48525
Tssr48526 5 120621601 to 120621616 15 + TSS region transcription start site region 48526
Gm43579 5 120626315 to 120627621 1306 - antisense lncRNA gene predicted gene 43579
Cpgi16506 5 120626749 to 120627241 492 CpG island CpG island 16506
Cfap73 5 120628335 to 120634235 5900 - protein coding gene cilia and flagella associated protein 73
Cpgi16507 5 120629725 to 120630126 401 CpG island CpG island 16507
Tssr1621 5 120629761 to 120629771 10 - TSS region transcription start site region 1621
Tssr52948 5 120629978 to 120629988 10 - TSS region transcription start site region 52948
Tssr52949 5 120630007 to 120630019 12 - TSS region transcription start site region 52949
Tssr48527 5 120630045 to 120630056 11 + TSS region transcription start site region 48527
Tssr48528 5 120630066 to 120630077 11 + TSS region transcription start site region 48528
Tssr48529 5 120630082 to 120630089 7 + TSS region transcription start site region 48529
Tssr48530 5 120630094 to 120630101 7 + TSS region transcription start site region 48530
Cpgi16508 5 120631092 to 120631761 669 CpG island CpG island 16508
Tssr52950 5 120634276 to 120634294 18 - TSS region transcription start site region 52950
Gm42657 5 120641621 to 120641831 210 + pseudogene predicted gene 42657
Gm15749 5 120648040 to 120648749 709 + lincRNA gene predicted gene 15749
Cpgi16509 5 120648596 to 120649650 1054 CpG island CpG island 16509
Rasal1 5 120648812 to 120679597 30785 + protein coding gene RAS protein activator like 1 (GAP1 like)
Tssr48531 5 120649213 to 120649259 46 + TSS region transcription start site region 48531
Tssr48532 5 120649336 to 120649347 11 + TSS region transcription start site region 48532
Tssr48533 5 120655385 to 120655389 4 + TSS region transcription start site region 48533
Cpgi16510 5 120662093 to 120662260 167 CpG island CpG island 16510
Tssr48534 5 120678548 to 120678556 8 + TSS region transcription start site region 48534
Tssr48535 5 120678569 to 120678576 7 + TSS region transcription start site region 48535