Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:118724484-119670018

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med13l 5 118560701 to 118765438 204737 + protein coding gene mediator complex subunit 13-like
Aevm2 5 118725767 to 118725963 196 QTL autoimmune extremity vasculitis in MRL mice 2
D5Mit136 5 118725767 to 118725963 196 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 136
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Tssr48444 5 118765002 to 118765021 19 + TSS region transcription start site region 48444
Tssr48445 5 118765070 to 118765099 29 + TSS region transcription start site region 48445
Tssr48446 5 118765183 to 118765196 13 + TSS region transcription start site region 48446
Cpgi16438 5 118781480 to 118781882 402 CpG island CpG island 16438
Gm42015 5 118824374 to 118843310 18936 - lncRNA gene predicted gene, 42015
Gm43782 5 118875811 to 118877465 1654 - lincRNA gene predicted gene 43782
Gm43342 5 118928123 to 118935962 7839 + lincRNA gene predicted gene 43342
Cpgi16439 5 118929953 to 118930243 290 CpG island CpG island 16439
Tssr1614 5 118952322 to 118952335 13 + TSS region transcription start site region 1614
4930413E15Rik 5 118952339 to 118961261 8922 + lincRNA gene RIKEN cDNA 4930413E15 gene
Cpgi16440 5 118960589 to 118960780 191 CpG island CpG island 16440
Cpgi16441 5 118981223 to 118981482 259 CpG island CpG island 16441
Gm43784 5 118994561 to 118996996 2435 - unclassified gene predicted gene 43784
Cpgi16442 5 119005927 to 119006429 502 CpG island CpG island 16442
Cpgi16443 5 119009921 to 119010245 324 CpG island CpG island 16443
Gm30895 5 119053626 to 119075293 21667 + lncRNA gene predicted gene, 30895
Gm31034 5 119075634 to 119086806 11172 - lncRNA gene predicted gene, 31034
Tssr52904 5 119080850 to 119080862 12 - TSS region transcription start site region 52904
Cpgi16444 5 119086107 to 119086706 599 CpG island CpG island 16444
1700081H04Rik 5 119108236 to 119114543 6307 + lincRNA gene RIKEN cDNA 1700081H04 gene
Tssr48447 5 119133644 to 119133673 29 + TSS region transcription start site region 48447
Gm31129 5 119133651 to 119138408 4757 + lncRNA gene predicted gene, 31129
Cpgi16445 5 119167918 to 119168109 191 CpG island CpG island 16445
Gm7538 5 119194484 to 119200018 5534 - lincRNA gene predicted gene 7538
Cpgi16446 5 119271089 to 119271430 341 CpG island CpG island 16446
Cpgi16447 5 119279173 to 119279382 209 CpG island CpG island 16447
Gm31190 5 119280244 to 119300425 20181 - lncRNA gene predicted gene, 31190
n-R5s175 5 119297245 to 119297361 116 + rRNA gene nuclear encoded rRNA 5S 175
Tssr48448 5 119322009 to 119322022 13 + TSS region transcription start site region 48448
Gm42016 5 119325999 to 119330526 4527 + lncRNA gene predicted gene, 42016
Tssr48449 5 119326009 to 119326041 32 + TSS region transcription start site region 48449
Cpgi16448 5 119374001 to 119374231 230 CpG island CpG island 16448
Mdq15 5 119440195 to 119440195 0 QTL mammary ductal QTL 15
Cpgi16449 5 119440660 to 119440878 218 CpG island CpG island 16449
Gm31314 5 119518795 to 119527954 9159 - lincRNA gene predicted gene, 31314
Tssr52905 5 119527945 to 119527962 17 - TSS region transcription start site region 52905
Cpgi16450 5 119547090 to 119547381 291 CpG island CpG island 16450
Cpgi16451 5 119563881 to 119564309 428 CpG island CpG island 16451
AW549542 5 119570129 to 119580358 10229 - lncRNA gene expressed sequence AW549542
Tssr52906 5 119570736 to 119570739 3 - TSS region transcription start site region 52906
Tssr52907 5 119580532 to 119580550 18 - TSS region transcription start site region 52907
Tssr52908 5 119583719 to 119583730 11 - TSS region transcription start site region 52908
Gm43399 5 119595831 to 119598204 2373 - unclassified gene predicted gene 43399
Tbx3os1 5 119597977 to 119671328 73351 - antisense lncRNA gene T-box 3, opposite strand 1
Tssr52909 5 119616684 to 119616696 12 - TSS region transcription start site region 52909
Tssr48450 5 119625939 to 119625966 27 + TSS region transcription start site region 48450
Gm16063 5 119625942 to 119634462 8520 + lincRNA gene predicted gene 16063
Cpgi16452 5 119626755 to 119627010 255 CpG island CpG island 16452
Tssr52910 5 119628707 to 119628754 47 - TSS region transcription start site region 52910
Gm16064 5 119646134 to 119659262 13128 + lincRNA gene predicted gene 16064
Cpgi16453 5 119656918 to 119657142 224 CpG island CpG island 16453
Cpgi16454 5 119660656 to 119660937 281 CpG island CpG island 16454
Cpgi16455 5 119668188 to 119669140 952 CpG island CpG island 16455
Cpgi16456 5 119669654 to 119671483 1829 CpG island CpG island 16456
Tssr48451 5 119669876 to 119669916 40 + TSS region transcription start site region 48451
Tssr48452 5 119669943 to 119669954 11 + TSS region transcription start site region 48452