Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:118644484-119750018

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Med13l 5 118560701 to 118765438 204737 + protein coding gene mediator complex subunit 13-like
Gm43274 5 118644373 to 118649372 4999 + unclassified gene predicted gene 43274
Tssr48442 5 118649591 to 118649601 10 + TSS region transcription start site region 48442
Gm43052 5 118687618 to 118689245 1627 + unclassified gene predicted gene 43052
Gm43051 5 118707402 to 118710079 2677 + unclassified gene predicted gene 43051
Tssr48443 5 118707406 to 118707409 3 + TSS region transcription start site region 48443
Aevm2 5 118725767 to 118725963 196 QTL autoimmune extremity vasculitis in MRL mice 2
D5Mit136 5 118725767 to 118725963 196 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 136
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Tssr48444 5 118765002 to 118765021 19 + TSS region transcription start site region 48444
Tssr48445 5 118765070 to 118765099 29 + TSS region transcription start site region 48445
Tssr48446 5 118765183 to 118765196 13 + TSS region transcription start site region 48446
Cpgi16438 5 118781480 to 118781882 402 CpG island CpG island 16438
Gm42015 5 118824374 to 118843310 18936 - lncRNA gene predicted gene, 42015
Gm43782 5 118875811 to 118877465 1654 - lincRNA gene predicted gene 43782
Gm43342 5 118928123 to 118935962 7839 + lincRNA gene predicted gene 43342
Cpgi16439 5 118929953 to 118930243 290 CpG island CpG island 16439
Tssr1614 5 118952322 to 118952335 13 + TSS region transcription start site region 1614
4930413E15Rik 5 118952339 to 118961261 8922 + lincRNA gene RIKEN cDNA 4930413E15 gene
Cpgi16440 5 118960589 to 118960780 191 CpG island CpG island 16440
Cpgi16441 5 118981223 to 118981482 259 CpG island CpG island 16441
Gm43784 5 118994561 to 118996996 2435 - unclassified gene predicted gene 43784
Cpgi16442 5 119005927 to 119006429 502 CpG island CpG island 16442
Cpgi16443 5 119009921 to 119010245 324 CpG island CpG island 16443
Gm30895 5 119053626 to 119075293 21667 + lncRNA gene predicted gene, 30895
Gm31034 5 119075634 to 119086806 11172 - lncRNA gene predicted gene, 31034
Tssr52904 5 119080850 to 119080862 12 - TSS region transcription start site region 52904
Cpgi16444 5 119086107 to 119086706 599 CpG island CpG island 16444
1700081H04Rik 5 119108236 to 119114543 6307 + lincRNA gene RIKEN cDNA 1700081H04 gene
Tssr48447 5 119133644 to 119133673 29 + TSS region transcription start site region 48447
Gm31129 5 119133651 to 119138408 4757 + lncRNA gene predicted gene, 31129
Cpgi16445 5 119167918 to 119168109 191 CpG island CpG island 16445
Gm7538 5 119194484 to 119200018 5534 - lincRNA gene predicted gene 7538
Cpgi16446 5 119271089 to 119271430 341 CpG island CpG island 16446
Cpgi16447 5 119279173 to 119279382 209 CpG island CpG island 16447
Gm31190 5 119280244 to 119300425 20181 - lncRNA gene predicted gene, 31190
n-R5s175 5 119297245 to 119297361 116 + rRNA gene nuclear encoded rRNA 5S 175
Tssr48448 5 119322009 to 119322022 13 + TSS region transcription start site region 48448
Gm42016 5 119325999 to 119330526 4527 + lncRNA gene predicted gene, 42016
Tssr48449 5 119326009 to 119326041 32 + TSS region transcription start site region 48449
Cpgi16448 5 119374001 to 119374231 230 CpG island CpG island 16448
Mdq15 5 119440195 to 119440195 0 QTL mammary ductal QTL 15
Cpgi16449 5 119440660 to 119440878 218 CpG island CpG island 16449
Gm31314 5 119518795 to 119527954 9159 - lincRNA gene predicted gene, 31314
Tssr52905 5 119527945 to 119527962 17 - TSS region transcription start site region 52905
Cpgi16450 5 119547090 to 119547381 291 CpG island CpG island 16450
Cpgi16451 5 119563881 to 119564309 428 CpG island CpG island 16451
AW549542 5 119570129 to 119580358 10229 - lncRNA gene expressed sequence AW549542
Tssr52906 5 119570736 to 119570739 3 - TSS region transcription start site region 52906
Tssr52907 5 119580532 to 119580550 18 - TSS region transcription start site region 52907
Tssr52908 5 119583719 to 119583730 11 - TSS region transcription start site region 52908
Gm43399 5 119595831 to 119598204 2373 - unclassified gene predicted gene 43399
Tbx3os1 5 119597977 to 119671328 73351 - antisense lncRNA gene T-box 3, opposite strand 1
Tssr52909 5 119616684 to 119616696 12 - TSS region transcription start site region 52909
Tssr48450 5 119625939 to 119625966 27 + TSS region transcription start site region 48450
Gm16063 5 119625942 to 119634462 8520 + lincRNA gene predicted gene 16063
Cpgi16452 5 119626755 to 119627010 255 CpG island CpG island 16452
Tssr52910 5 119628707 to 119628754 47 - TSS region transcription start site region 52910
Gm16064 5 119646134 to 119659262 13128 + lincRNA gene predicted gene 16064
Cpgi16453 5 119656918 to 119657142 224 CpG island CpG island 16453
Cpgi16454 5 119660656 to 119660937 281 CpG island CpG island 16454
Cpgi16455 5 119668188 to 119669140 952 CpG island CpG island 16455
Cpgi16456 5 119669654 to 119671483 1829 CpG island CpG island 16456
Tssr48451 5 119669876 to 119669916 40 + TSS region transcription start site region 48451
Tssr48452 5 119669943 to 119669954 11 + TSS region transcription start site region 48452
Tssr48453 5 119670400 to 119670407 7 + TSS region transcription start site region 48453
Tssr48454 5 119670658 to 119670676 18 + TSS region transcription start site region 48454
Tbx3 5 119670669 to 119684724 14055 + protein coding gene T-box 3
Tssr48455 5 119670699 to 119670704 5 + TSS region transcription start site region 48455
Tssr1615 5 119670712 to 119670721 9 + TSS region transcription start site region 1615
Tssr1616 5 119670726 to 119670730 4 + TSS region transcription start site region 1616
Tssr48456 5 119670798 to 119670801 3 + TSS region transcription start site region 48456
Tssr48457 5 119670825 to 119670836 11 + TSS region transcription start site region 48457
Tssr52911 5 119670838 to 119670844 6 - TSS region transcription start site region 52911
Tssr48458 5 119670972 to 119670983 11 + TSS region transcription start site region 48458
Tssr1617 5 119670984 to 119670991 7 + TSS region transcription start site region 1617
Tssr48459 5 119671011 to 119671040 29 + TSS region transcription start site region 48459
Tssr48460 5 119671082 to 119671091 9 + TSS region transcription start site region 48460
Tssr48461 5 119671160 to 119671162 2 + TSS region transcription start site region 48461
Tssr48462 5 119671253 to 119671273 20 + TSS region transcription start site region 48462
Tssr52912 5 119671360 to 119671369 9 - TSS region transcription start site region 52912
Tssr52913 5 119671378 to 119671398 20 - TSS region transcription start site region 52913
Tssr48463 5 119671437 to 119671452 15 + TSS region transcription start site region 48463
Tssr52914 5 119671498 to 119671510 12 - TSS region transcription start site region 52914
Tssr48464 5 119671590 to 119671613 23 + TSS region transcription start site region 48464
Tssr48465 5 119671652 to 119671662 10 + TSS region transcription start site region 48465
Tssr48466 5 119671683 to 119671699 16 + TSS region transcription start site region 48466
Cpgi16457 5 119671736 to 119672293 557 CpG island CpG island 16457
Tssr48467 5 119671828 to 119671864 36 + TSS region transcription start site region 48467
Tssr48468 5 119680221 to 119680236 15 + TSS region transcription start site region 48468
Tssr48469 5 119680266 to 119680287 21 + TSS region transcription start site region 48469
Cpgi16458 5 119680286 to 119681121 835 CpG island CpG island 16458
Tssr48470 5 119680368 to 119680423 55 + TSS region transcription start site region 48470
Tssr48471 5 119681012 to 119681013 1 + TSS region transcription start site region 48471
Cpgi16459 5 119682582 to 119683066 484 CpG island CpG island 16459
Tssr1618 5 119684530 to 119684545 15 + TSS region transcription start site region 1618
Tbx3os2 5 119685095 to 119691218 6123 - lincRNA gene T-box 3, opposite strand 2
Tssr48472 5 119686857 to 119686865 8 + TSS region transcription start site region 48472
Cpgi16460 5 119687063 to 119687379 316 CpG island CpG island 16460
Cpgi16461 5 119687888 to 119688136 248 CpG island CpG island 16461
Cpgi16462 5 119691133 to 119691328 195 CpG island CpG island 16462
Tssr52915 5 119691211 to 119691254 43 - TSS region transcription start site region 52915
Tssr52916 5 119691256 to 119691266 10 - TSS region transcription start site region 52916
Cpgi16463 5 119749251 to 119749463 212 CpG island CpG island 16463