Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:118066440-119046463

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxw8 5 118064981 to 118155458 90477 - protein coding gene F-box and WD-40 domain protein 8
Gm9754 5 118065360 to 118069710 4350 + antisense lncRNA gene predicted gene 9754
Tssr52891 5 118067847 to 118067856 9 - TSS region transcription start site region 52891
Gm30466 5 118071174 to 118074364 3190 + lncRNA gene predicted gene, 30466
Gm26411 5 118148788 to 118148894 106 - snRNA gene predicted gene, 26411
Cpgi16424 5 118154907 to 118155611 704 CpG island CpG island 16424
Tssr48416 5 118154944 to 118154955 11 + TSS region transcription start site region 48416
Tssr52892 5 118155379 to 118155469 90 - TSS region transcription start site region 52892
Gm30522 5 118161138 to 118165023 3885 + lncRNA gene predicted gene, 30522
Cpgi16425 5 118169159 to 118170448 1289 CpG island CpG island 16425
Tssr52893 5 118169585 to 118169589 4 - TSS region transcription start site region 52893
Tssr48417 5 118169712 to 118169743 31 + TSS region transcription start site region 48417
Hrk 5 118169764 to 118189478 19714 + protein coding gene harakiri, BCL2 interacting protein (contains only BH3 domain)
Cpgi16426 5 118171263 to 118172536 1273 CpG island CpG island 16426
Rnft2 5 118190734 to 118245111 54377 - protein coding gene ring finger protein, transmembrane 2
Criq2 5 118194514 to 118194514 0 QTL Citrobacter rodentium infection QTL 2
Gm24050 5 118211053 to 118211342 289 - unclassified non-coding RNA gene predicted gene, 24050
Cpgi16427 5 118214410 to 118214845 435 CpG island CpG island 16427
Tssr52894 5 118232435 to 118232465 30 - TSS region transcription start site region 52894
Cpgi16428 5 118244633 to 118245632 999 CpG island CpG island 16428
Tssr52895 5 118244983 to 118245048 65 - TSS region transcription start site region 52895
Tssr48418 5 118245226 to 118245289 63 + TSS region transcription start site region 48418
2410131K14Rik 5 118245227 to 118263114 17887 + protein coding gene RIKEN cDNA 2410131K14 gene
Tssr48419 5 118245301 to 118245358 57 + TSS region transcription start site region 48419
Tssr48420 5 118245383 to 118245443 60 + TSS region transcription start site region 48420
Gm25076 5 118266449 to 118266580 131 + snoRNA gene predicted gene, 25076
Tssr48421 5 118318967 to 118318972 5 + TSS region transcription start site region 48421
Cpgi16429 5 118326996 to 118327225 229 CpG island CpG island 16429
Cpgi16430 5 118331208 to 118331448 240 CpG island CpG island 16430
Cpgi16431 5 118331914 to 118332269 355 CpG island CpG island 16431
Gm46942 5 118359909 to 118360405 496 + lncRNA gene predicted gene, 46942
Gm30604 5 118373154 to 118380918 7764 - lncRNA gene predicted gene, 30604
Tssr52896 5 118380484 to 118380502 18 - TSS region transcription start site region 52896
Cpgi16432 5 118380624 to 118381021 397 CpG island CpG island 16432
Cpgi16433 5 118381344 to 118381586 242 CpG island CpG island 16433
Tssr48422 5 118381646 to 118381658 12 + TSS region transcription start site region 48422
Cpgi16434 5 118396257 to 118396496 239 CpG island CpG island 16434
Gm28563 5 118396806 to 118397330 524 - lincRNA gene predicted gene 28563
Gm30657 5 118402792 to 118413581 10789 - lncRNA gene predicted gene, 30657
Tssr48423 5 118404883 to 118404890 7 + TSS region transcription start site region 48423
Tssr52897 5 118413537 to 118413553 16 - TSS region transcription start site region 52897
Gm26455 5 118418727 to 118418818 91 - miRNA gene predicted gene, 26455
Tssr52898 5 118422000 to 118422005 5 - TSS region transcription start site region 52898
Cpgi16435 5 118422652 to 118422860 208 CpG island CpG island 16435
Tssr52899 5 118434816 to 118434848 32 - TSS region transcription start site region 52899
Tssr48424 5 118435840 to 118435848 8 + TSS region transcription start site region 48424
Tssr48425 5 118437485 to 118437495 10 + TSS region transcription start site region 48425
Tssr48426 5 118437510 to 118437518 8 + TSS region transcription start site region 48426
Gm30746 5 118462049 to 118463084 1035 + lncRNA gene predicted gene, 30746
Tssr52900 5 118466469 to 118466485 16 - TSS region transcription start site region 52900
Tssr52901 5 118477750 to 118477778 28 - TSS region transcription start site region 52901
Tssr52902 5 118477793 to 118477806 13 - TSS region transcription start site region 52902
Tssr48427 5 118478580 to 118478591 11 + TSS region transcription start site region 48427
Tssr48428 5 118486950 to 118486994 44 + TSS region transcription start site region 48428
Gm46921 5 118491256 to 118492630 1374 - lncRNA gene predicted gene, 46921
Gm15754 5 118499398 to 118503454 4056 + pseudogene predicted gene 15754
D5Mit407 5 118506247 to 118506341 94 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 407
Cpgi16436 5 118513843 to 118514506 663 CpG island CpG island 16436
Tssr52903 5 118514030 to 118514045 15 - TSS region transcription start site region 52903
Tssr48429 5 118556440 to 118556463 23 + TSS region transcription start site region 48429
Tssr48430 5 118556484 to 118556510 26 + TSS region transcription start site region 48430
Cpgi16437 5 118559379 to 118561786 2407 CpG island CpG island 16437
Tssr48431 5 118560281 to 118560307 26 + TSS region transcription start site region 48431
Tssr48432 5 118560358 to 118560453 95 + TSS region transcription start site region 48432
Tssr48433 5 118560624 to 118560690 66 + TSS region transcription start site region 48433
Med13l 5 118560701 to 118765438 204737 + protein coding gene mediator complex subunit 13-like
Tssr48434 5 118561104 to 118561128 24 + TSS region transcription start site region 48434
Tssr48435 5 118561139 to 118561150 11 + TSS region transcription start site region 48435
Tssr48436 5 118561154 to 118561172 18 + TSS region transcription start site region 48436
Gm43785 5 118561757 to 118563101 1344 - unclassified gene predicted gene 43785
Tssr48437 5 118599168 to 118599172 4 + TSS region transcription start site region 48437
Gm43788 5 118602716 to 118605132 2416 + unclassified gene predicted gene 43788
D5Ertd255e 5 118604870 to 118605118 248 DNA segment DNA segment, Chr 5, ERATO Doi 255, expressed
Tssr48438 5 118614974 to 118614977 3 + TSS region transcription start site region 48438
Gm43275 5 118618294 to 118619313 1019 + unclassified gene predicted gene 43275
Tssr48439 5 118628941 to 118628953 12 + TSS region transcription start site region 48439
Tssr48440 5 118637706 to 118637713 7 + TSS region transcription start site region 48440
Tssr48441 5 118639524 to 118639528 4 + TSS region transcription start site region 48441
Gm43274 5 118644373 to 118649372 4999 + unclassified gene predicted gene 43274
Tssr48442 5 118649591 to 118649601 10 + TSS region transcription start site region 48442
Gm43052 5 118687618 to 118689245 1627 + unclassified gene predicted gene 43052
Gm43051 5 118707402 to 118710079 2677 + unclassified gene predicted gene 43051
Tssr48443 5 118707406 to 118707409 3 + TSS region transcription start site region 48443
Aevm2 5 118725767 to 118725963 196 QTL autoimmune extremity vasculitis in MRL mice 2
D5Mit136 5 118725767 to 118725963 196 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 136
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Tssr48444 5 118765002 to 118765021 19 + TSS region transcription start site region 48444
Tssr48445 5 118765070 to 118765099 29 + TSS region transcription start site region 48445
Tssr48446 5 118765183 to 118765196 13 + TSS region transcription start site region 48446
Cpgi16438 5 118781480 to 118781882 402 CpG island CpG island 16438
Gm42015 5 118824374 to 118843310 18936 - lncRNA gene predicted gene, 42015
Gm43782 5 118875811 to 118877465 1654 - lincRNA gene predicted gene 43782
Gm43342 5 118928123 to 118935962 7839 + lincRNA gene predicted gene 43342
Cpgi16439 5 118929953 to 118930243 290 CpG island CpG island 16439
Tssr1614 5 118952322 to 118952335 13 + TSS region transcription start site region 1614
4930413E15Rik 5 118952339 to 118961261 8922 + lincRNA gene RIKEN cDNA 4930413E15 gene
Cpgi16440 5 118960589 to 118960780 191 CpG island CpG island 16440
Cpgi16441 5 118981223 to 118981482 259 CpG island CpG island 16441
Gm43784 5 118994561 to 118996996 2435 - unclassified gene predicted gene 43784
Cpgi16442 5 119005927 to 119006429 502 CpG island CpG island 16442
Cpgi16443 5 119009921 to 119010245 324 CpG island CpG island 16443