MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:117342305-117393589

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Vsig10	5	117319083 to 117355005	35922	+	protein coding gene	V-set and immunoglobulin domain containing 10
Gm15727	5	117348907 to 117349343	436	-	pseudogene	predicted gene 15727
Cpgi16412	5	117349072 to 117349449	377		CpG island	CpG island 16412
Gm42012	5	117355490 to 117357156	1666	-	lncRNA gene	predicted gene, 42012
Tssr48381	5	117356630 to 117356641	11	+	TSS region	transcription start site region 48381
Cpgi16413	5	117356702 to 117358126	1424		CpG island	CpG island 16413
Tssr48382	5	117356843 to 117356876	33	+	TSS region	transcription start site region 48382
Tssr48383	5	117357210 to 117357223	13	+	TSS region	transcription start site region 48383
Tssr48384	5	117357274 to 117357355	81	+	TSS region	transcription start site region 48384
Wsb2	5	117357305 to 117378589	21284	+	protein coding gene	WD repeat and SOCS box-containing 2
Tssr48385	5	117363498 to 117363512	14	+	TSS region	transcription start site region 48385
Tssr48386	5	117363513 to 117363552	39	+	TSS region	transcription start site region 48386
Rfc5	5	117379145 to 117389023	9878	-	protein coding gene	replication factor C (activator 1) 5
Cpgi16414	5	117388512 to 117389378	866		CpG island	CpG island 16414
Tssr52883	5	117388973 to 117389027	54	-	TSS region	transcription start site region 52883
Gm15728	5	117388979 to 117391459	2480	+	lincRNA gene	predicted gene 15728
Tssr52884	5	117389029 to 117389051	22	-	TSS region	transcription start site region 52884
Tssr48387	5	117389115 to 117389181	66	+	TSS region	transcription start site region 48387