Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:116893130-117123073

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21 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29972 5 116918766 to 116935265 16499 - lncRNA gene predicted gene, 29972
Cpgi16402 5 116956816 to 116957098 282 CpG island CpG island 16402
Gm30028 5 116998130 to 117018073 19943 - lncRNA gene predicted gene, 30028
Tssr52873 5 117004702 to 117004713 11 - TSS region transcription start site region 52873
Tssr52874 5 117004718 to 117004723 5 - TSS region transcription start site region 52874
Tssr52875 5 117004726 to 117004738 12 - TSS region transcription start site region 52875
Gm7478 5 117058812 to 117059392 580 + pseudogene predicted gene 7478
Gm42011 5 117075954 to 117087519 11565 + lncRNA gene predicted gene, 42011
Suds3 5 117091678 to 117115993 24315 - protein coding gene suppressor of defective silencing 3 homolog (S. cerevisiae)
Cpgi16403 5 117103668 to 117103841 173 CpG island CpG island 16403
Cpgi16404 5 117115124 to 117116432 1308 CpG island CpG island 16404
9530046B11Rik 5 117115218 to 117118723 3505 + antisense lncRNA gene RIKEN cDNA 9530046B11 gene
Tssr52876 5 117115882 to 117115906 24 - TSS region transcription start site region 52876
Tssr52877 5 117115909 to 117115958 49 - TSS region transcription start site region 52877
Tssr52878 5 117115972 to 117116010 38 - TSS region transcription start site region 52878
Tssr52879 5 117116085 to 117116097 12 - TSS region transcription start site region 52879
Cpgi16405 5 117119723 to 117121065 1342 CpG island CpG island 16405
Tssr52880 5 117119876 to 117119897 21 - TSS region transcription start site region 52880
Taok3 5 117120112 to 117275101 154989 + protein coding gene TAO kinase 3
Tssr48350 5 117120120 to 117120180 60 + TSS region transcription start site region 48350
Tssr48351 5 117120185 to 117120196 11 + TSS region transcription start site region 48351