Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:116425850-116665880

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42009 5 116423057 to 116426000 2943 + lncRNA gene predicted gene, 42009
Tssr48345 5 116438712 to 116438723 11 + TSS region transcription start site region 48345
Srrm4os 5 116438722 to 116465487 26765 + antisense lncRNA gene serine/arginine repetitive matrix 4, opposite strand
Srrm4 5 116439275 to 116591817 152542 - protein coding gene serine/arginine repetitive matrix 4
Tssr52863 5 116441285 to 116441296 11 - TSS region transcription start site region 52863
Cpgi16396 5 116444439 to 116444859 420 CpG island CpG island 16396
Cpgi16397 5 116446531 to 116446891 360 CpG island CpG island 16397
Tssr52864 5 116446707 to 116446740 33 - TSS region transcription start site region 52864
Cpgi16398 5 116453475 to 116453770 295 CpG island CpG island 16398
Gm42853 5 116456098 to 116457484 1386 - unclassified gene predicted gene 42853
4933430H06Rik 5 116501374 to 116502716 1342 - unclassified gene RIKEN cDNA 4933430H06 gene
Cpgi16399 5 116510686 to 116511107 421 CpG island CpG island 16399
Tssr52865 5 116545045 to 116545055 10 - TSS region transcription start site region 52865
Tssr52866 5 116545850 to 116545880 30 - TSS region transcription start site region 52866
Cpgi16400 5 116571580 to 116571740 160 CpG island CpG island 16400
Gm42854 5 116572527 to 116573495 968 - sense intronic lncRNA gene predicted gene 42854
Cpgi16401 5 116591005 to 116592580 1575 CpG island CpG island 16401
Tssr52867 5 116591472 to 116591483 11 - TSS region transcription start site region 52867
Tssr52868 5 116591782 to 116591793 11 - TSS region transcription start site region 52868
Tssr52869 5 116591811 to 116591830 19 - TSS region transcription start site region 52869
Tssr52870 5 116591858 to 116591865 7 - TSS region transcription start site region 52870
D5Mit209 5 116622324 to 116622648 324 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 209
Gstm2-ps1 5 116632908 to 116633564 656 - pseudogene glutathione S-transferase mu 2 (muscle), pseudogene 1
Tssr52871 5 116633015 to 116633019 4 - TSS region transcription start site region 52871
Tssr52872 5 116633605 to 116633607 2 - TSS region transcription start site region 52872
Tssr48346 5 116635293 to 116635299 6 + TSS region transcription start site region 48346
Gm43122 5 116642736 to 116830554 187818 - lincRNA gene predicted gene 43122