Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115562257-115902283

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rplp0 5 115559467 to 115563727 4260 + protein coding gene ribosomal protein, large, P0
Cpgi16382 5 115564716 to 115566004 1288 CpG island CpG island 16382
Gcn1 5 115565254 to 115622654 57400 + protein coding gene GCN1 activator of EIF2AK4
Tssr48316 5 115565256 to 115565281 25 + TSS region transcription start site region 48316
Tssr48317 5 115575148 to 115575207 59 + TSS region transcription start site region 48317
Mir7029 5 115580949 to 115581009 60 + miRNA gene microRNA 7029
Cpgi16383 5 115602399 to 115602814 415 CpG island CpG island 16383
Tssr48318 5 115605642 to 115605651 9 + TSS region transcription start site region 48318
Tssr48319 5 115610443 to 115610444 1 + TSS region transcription start site region 48319
Tssr48320 5 115611841 to 115611853 12 + TSS region transcription start site region 48320
1110006O24Rik 5 115631049 to 115631816 767 - lincRNA gene RIKEN cDNA 1110006O24 gene
Cpgi16384 5 115631170 to 115632835 1665 CpG island CpG island 16384
Tssr52821 5 115631780 to 115631829 49 - TSS region transcription start site region 52821
Tssr48321 5 115631883 to 115631895 12 + TSS region transcription start site region 48321
Rab35 5 115631899 to 115647158 15259 + protein coding gene RAB35, member RAS oncogene family
Tssr48322 5 115631902 to 115631933 31 + TSS region transcription start site region 48322
Tssr48323 5 115631982 to 115632033 51 + TSS region transcription start site region 48323
Tssr48324 5 115632036 to 115632054 18 + TSS region transcription start site region 48324
Mir7030 5 115645573 to 115645632 59 + miRNA gene microRNA 7030
Bicdl1 5 115648175 to 115731621 83446 - protein coding gene BICD family like cargo adaptor 1
Cpgi16385 5 115652682 to 115653362 680 CpG island CpG island 16385
Tssr52822 5 115652826 to 115652829 3 - TSS region transcription start site region 52822
Tssr52823 5 115652953 to 115652966 13 - TSS region transcription start site region 52823
Tssr52824 5 115652974 to 115652992 18 - TSS region transcription start site region 52824
Cpgi16386 5 115730724 to 115733050 2326 CpG island CpG island 16386
Tssr52825 5 115732211 to 115732256 45 - TSS region transcription start site region 52825
Tssr52826 5 115732257 to 115732283 26 - TSS region transcription start site region 52826
Tssr52827 5 115732481 to 115732496 15 - TSS region transcription start site region 52827
Tssr52828 5 115754915 to 115754930 15 - TSS region transcription start site region 52828
Gm13841 5 115801677 to 115802159 482 - pseudogene predicted gene 13841
Cpgi16387 5 115844707 to 115845402 695 CpG island CpG island 16387
Cit 5 115845224 to 116008586 163362 + protein coding gene citron
Tssr48325 5 115845229 to 115845301 72 + TSS region transcription start site region 48325
Tssr48326 5 115859036 to 115859074 38 + TSS region transcription start site region 48326
Tssr48327 5 115859123 to 115859132 9 + TSS region transcription start site region 48327
D5Mit187 5 115863998 to 115864139 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 187
Tssr48328 5 115866483 to 115866488 5 + TSS region transcription start site region 48328
Gm42473 5 115870144 to 115872434 2290 + unclassified gene predicted gene 42473
Gm42008 5 115901533 to 115907321 5788 - lncRNA gene predicted gene, 42008