Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115504488-115614499

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819
Tssr52820 5 115535773 to 115535794 21 - TSS region transcription start site region 52820
Tssr48304 5 115542906 to 115542937 31 + TSS region transcription start site region 48304
Tssr48305 5 115542944 to 115542956 12 + TSS region transcription start site region 48305
Tssr48306 5 115542972 to 115543007 35 + TSS region transcription start site region 48306
Tssr48307 5 115544082 to 115544100 18 + TSS region transcription start site region 48307
Tssr48308 5 115544106 to 115544145 39 + TSS region transcription start site region 48308
Tssr48309 5 115544219 to 115544254 35 + TSS region transcription start site region 48309
Tssr48310 5 115544341 to 115544378 37 + TSS region transcription start site region 48310
Tssr48311 5 115544398 to 115544424 26 + TSS region transcription start site region 48311
Tssr48312 5 115545272 to 115545315 43 + TSS region transcription start site region 48312
Cpgi16380 5 115553927 to 115554099 172 CpG island CpG island 16380
Tssr48313 5 115557312 to 115557316 4 + TSS region transcription start site region 48313
Cpgi16381 5 115559192 to 115560081 889 CpG island CpG island 16381
Rplp0 5 115559467 to 115563727 4260 + protein coding gene ribosomal protein, large, P0
Tssr48314 5 115559488 to 115559499 11 + TSS region transcription start site region 48314
Tssr48315 5 115559505 to 115559519 14 + TSS region transcription start site region 48315
Cpgi16382 5 115564716 to 115566004 1288 CpG island CpG island 16382
Gcn1 5 115565254 to 115622654 57400 + protein coding gene GCN1 activator of EIF2AK4
Tssr48316 5 115565256 to 115565281 25 + TSS region transcription start site region 48316
Tssr48317 5 115575148 to 115575207 59 + TSS region transcription start site region 48317
Mir7029 5 115580949 to 115581009 60 + miRNA gene microRNA 7029
Cpgi16383 5 115602399 to 115602814 415 CpG island CpG island 16383
Tssr48318 5 115605642 to 115605651 9 + TSS region transcription start site region 48318
Tssr48319 5 115610443 to 115610444 1 + TSS region transcription start site region 48319
Tssr48320 5 115611841 to 115611853 12 + TSS region transcription start site region 48320