Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114933469-115173840

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
Oasl1 5 114923240 to 114937915 14675 + protein coding gene 2'-5' oligoadenylate synthetase-like 1
Tssr48176 5 114933630 to 114933641 11 + TSS region transcription start site region 48176
Tssr48177 5 114933660 to 114933683 23 + TSS region transcription start site region 48177
Tssr48178 5 114934186 to 114934215 29 + TSS region transcription start site region 48178
Tssr48179 5 114935911 to 114935926 15 + TSS region transcription start site region 48179
Tssr52744 5 114935946 to 114935993 47 - TSS region transcription start site region 52744
Tssr48180 5 114935975 to 114935986 11 + TSS region transcription start site region 48180
Tssr48181 5 114936034 to 114936047 13 + TSS region transcription start site region 48181
Tssr48182 5 114936949 to 114936963 14 + TSS region transcription start site region 48182
Tssr48183 5 114936973 to 114936986 13 + TSS region transcription start site region 48183
Tssr48184 5 114937027 to 114937045 18 + TSS region transcription start site region 48184
Tssr48185 5 114937126 to 114937144 18 + TSS region transcription start site region 48185
Tssr48186 5 114937217 to 114937232 15 + TSS region transcription start site region 48186
Tssr48187 5 114937304 to 114937315 11 + TSS region transcription start site region 48187
Tssr48188 5 114937388 to 114937401 13 + TSS region transcription start site region 48188
Tssr48189 5 114937429 to 114937459 30 + TSS region transcription start site region 48189
Tssr48190 5 114937862 to 114937879 17 + TSS region transcription start site region 48190
Tssr48191 5 114937911 to 114937926 15 + TSS region transcription start site region 48191
Cpgi16342 5 114942057 to 114942690 633 CpG island CpG island 16342
2210016L21Rik 5 114942163 to 114948540 6377 + protein coding gene RIKEN cDNA 2210016L21 gene
Tssr48192 5 114942176 to 114942212 36 + TSS region transcription start site region 48192
Tssr48193 5 114942216 to 114942223 7 + TSS region transcription start site region 48193
Hnf1a 5 114948980 to 114971062 22082 - protein coding gene HNF1 homeobox A
Tssr52745 5 114950822 to 114950853 31 - TSS region transcription start site region 52745
Cpgi16343 5 114952469 to 114952711 242 CpG island CpG island 16343
Tssr52746 5 114952718 to 114952721 3 - TSS region transcription start site region 52746
Tssr52747 5 114952750 to 114952763 13 - TSS region transcription start site region 52747
Cpgi16344 5 114955315 to 114955506 191 CpG island CpG island 16344
D5Mit158 5 114963169 to 114963481 312 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 158
Tssr48194 5 114968759 to 114968773 14 + TSS region transcription start site region 48194
Hnf1aos1 5 114968784 to 114998042 29258 + antisense lncRNA gene HNF1 homeobox A, opposite strand 1
Tssr48195 5 114968789 to 114968808 19 + TSS region transcription start site region 48195
Hnf1aos2 5 114968823 to 114971400 2577 + antisense lncRNA gene HNF1 homeobox A, opposite strand 2
Tssr48196 5 114968828 to 114968835 7 + TSS region transcription start site region 48196
Tssr48197 5 114969870 to 114969885 15 + TSS region transcription start site region 48197
Cpgi16345 5 114970593 to 114970964 371 CpG island CpG island 16345
Tssr52748 5 114970873 to 114970887 14 - TSS region transcription start site region 52748
Tssr52749 5 114971056 to 114971079 23 - TSS region transcription start site region 52749
Tssr52750 5 114971117 to 114971128 11 - TSS region transcription start site region 52750
Tssr52751 5 114973316 to 114973335 19 - TSS region transcription start site region 52751
1810017P11Rik 5 114975456 to 114976013 557 + unclassified gene RIKEN cDNA 1810017P11 gene
Cpgi16346 5 114979250 to 114979420 170 CpG island CpG island 16346
Tssr48198 5 114989663 to 114989683 20 + TSS region transcription start site region 48198
Cpgi16347 5 114996587 to 114996786 199 CpG island CpG island 16347
Cpgi16348 5 115004291 to 115004701 410 CpG island CpG island 16348
Cpgi16349 5 115010619 to 115012501 1882 CpG island CpG island 16349
Tssr48199 5 115011111 to 115011208 97 + TSS region transcription start site region 48199
Tssr48200 5 115011322 to 115011335 13 + TSS region transcription start site region 48200
Tssr48201 5 115011347 to 115011403 56 + TSS region transcription start site region 48201
Sppl3 5 115011524 to 115098790 87266 + protein coding gene signal peptide peptidase 3
Tssr48202 5 115025528 to 115025533 5 + TSS region transcription start site region 48202
C730045M19Rik 5 115039770 to 115041084 1314 + unclassified gene RIKEN cDNA C730045M19 gene
Tssr48203 5 115053461 to 115053468 7 + TSS region transcription start site region 48203
Gm13827 5 115053469 to 115053840 371 - pseudogene predicted gene 13827
Tssr48204 5 115082260 to 115082278 18 + TSS region transcription start site region 48204
Gm10401 5 115097689 to 115098295 606 - unclassified gene predicted gene 10401
Rpl37rt 5 115102923 to 115110268 7345 - protein coding gene ribosomal protein L37, retrotransposed
Tssr52752 5 115103540 to 115103560 20 - TSS region transcription start site region 52752
Acads 5 115110299 to 115119346 9047 - protein coding gene acyl-Coenzyme A dehydrogenase, short chain
Cpgi16350 5 115118976 to 115119504 528 CpG island CpG island 16350
Tssr52753 5 115119277 to 115119345 68 - TSS region transcription start site region 52753
Unc119b 5 115122566 to 115134975 12409 - protein coding gene unc-119 lipid binding chaperone B
Cpgi16351 5 115125194 to 115125501 307 CpG island CpG island 16351
Tssr52754 5 115127517 to 115127530 13 - TSS region transcription start site region 52754
Cpgi16352 5 115134237 to 115135091 854 CpG island CpG island 16352
Tssr52755 5 115134907 to 115134968 61 - TSS region transcription start site region 52755
Mlec 5 115142981 to 115158176 15195 - protein coding gene malectin
Tssr48205 5 115147702 to 115147723 21 + TSS region transcription start site region 48205
Tssr52756 5 115147841 to 115147887 46 - TSS region transcription start site region 52756
Tssr52757 5 115148006 to 115148039 33 - TSS region transcription start site region 52757
Tssr52758 5 115148055 to 115148074 19 - TSS region transcription start site region 52758
Tssr52759 5 115152370 to 115152381 11 - TSS region transcription start site region 52759
Tssr52760 5 115155175 to 115155203 28 - TSS region transcription start site region 52760
Tssr52761 5 115156927 to 115156932 5 - TSS region transcription start site region 52761
Cpgi16353 5 115157126 to 115159013 1887 CpG island CpG island 16353
Tssr52762 5 115158135 to 115158159 24 - TSS region transcription start site region 52762
Tssr52763 5 115158169 to 115158180 11 - TSS region transcription start site region 52763
Tssr52764 5 115158336 to 115158347 11 - TSS region transcription start site region 52764
Tssr52765 5 115158365 to 115158390 25 - TSS region transcription start site region 52765
Gm35465 5 115159499 to 115165455 5956 + lncRNA gene predicted gene, 35465
Cabp1 5 115168691 to 115194381 25690 - protein coding gene calcium binding protein 1
Cpgi16354 5 115172695 to 115172970 275 CpG island CpG island 16354