Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114393251-114788220

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ube3b 5 114380607 to 114421169 40562 + protein coding gene ubiquitin protein ligase E3B
Mir7027 5 114404468 to 114404539 71 + miRNA gene microRNA 7027
Tssr48084 5 114406770 to 114406787 17 + TSS region transcription start site region 48084
Tssr48085 5 114408084 to 114408097 13 + TSS region transcription start site region 48085
Tssr48086 5 114412545 to 114412555 10 + TSS region transcription start site region 48086
Tssr48087 5 114412825 to 114412836 11 + TSS region transcription start site region 48087
Cpgi16319 5 114428655 to 114428932 277 CpG island CpG island 16319
Mmab 5 114431034 to 114444060 13026 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
Cpgi16320 5 114443675 to 114444704 1029 CpG island CpG island 16320
Tssr52709 5 114443955 to 114443978 23 - TSS region transcription start site region 52709
Tssr52710 5 114443993 to 114444033 40 - TSS region transcription start site region 52710
Tssr52711 5 114444036 to 114444053 17 - TSS region transcription start site region 52711
Tssr48088 5 114444266 to 114444306 40 + TSS region transcription start site region 48088
Mvk 5 114444269 to 114460591 16322 + protein coding gene mevalonate kinase
Tssr48089 5 114444324 to 114444342 18 + TSS region transcription start site region 48089
Tssr48090 5 114444454 to 114444470 16 + TSS region transcription start site region 48090
Tssr48091 5 114450859 to 114450864 5 + TSS region transcription start site region 48091
Gm34722 5 114478990 to 114480223 1233 - lncRNA gene predicted gene, 34722
Cpgi16321 5 114485831 to 114486056 225 CpG island CpG island 16321
D5Mit241 5 114486293 to 114486424 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 241
Cpgi16322 5 114537590 to 114537773 183 CpG island CpG island 16322
Gm13790 5 114551289 to 114554016 2727 + lincRNA gene predicted gene 13790
Cpgi16323 5 114566799 to 114568608 1809 CpG island CpG island 16323
Tssr48092 5 114567404 to 114567418 14 + TSS region transcription start site region 48092
Fam222a 5 114568251 to 114613220 44969 + protein coding gene family with sequence similarity 222, member A
Cpgi16324 5 114571416 to 114571900 484 CpG island CpG island 16324
Gm34844 5 114591136 to 114604159 13023 - lncRNA gene predicted gene, 34844
Tssr48093 5 114597853 to 114597854 1 + TSS region transcription start site region 48093
Tssr1604 5 114601041 to 114601042 1 - TSS region transcription start site region 1604
Cpgi16325 5 114619411 to 114619613 202 CpG island CpG island 16325
Trpv4 5 114622152 to 114658421 36269 - protein coding gene transient receptor potential cation channel, subfamily V, member 4
Tssr48094 5 114623660 to 114623661 1 + TSS region transcription start site region 48094
Cpgi16326 5 114636094 to 114636613 519 CpG island CpG island 16326
Cpgi16327 5 114647693 to 114647995 302 CpG island CpG island 16327
Cpgi16328 5 114657762 to 114658831 1069 CpG island CpG island 16328
Tssr52712 5 114658364 to 114658379 15 - TSS region transcription start site region 52712
Tssr52713 5 114658382 to 114658413 31 - TSS region transcription start site region 52713
Tssr52714 5 114658414 to 114658424 10 - TSS region transcription start site region 52714
Cpgi16329 5 114667471 to 114667984 513 CpG island CpG island 16329
Tssr52715 5 114667573 to 114667587 14 - TSS region transcription start site region 52715
Gltp 5 114669490 to 114690935 21445 - protein coding gene glycolipid transfer protein
Tssr52716 5 114669755 to 114669759 4 - TSS region transcription start site region 52716
Tssr52717 5 114669883 to 114669914 31 - TSS region transcription start site region 52717
Tssr52718 5 114670053 to 114670067 14 - TSS region transcription start site region 52718
Tssr52719 5 114670071 to 114670112 41 - TSS region transcription start site region 52719
Tssr48095 5 114676321 to 114676337 16 + TSS region transcription start site region 48095
Cpgi16330 5 114690544 to 114691573 1029 CpG island CpG island 16330
Tssr52720 5 114690864 to 114690902 38 - TSS region transcription start site region 52720
Tssr52721 5 114690906 to 114690970 64 - TSS region transcription start site region 52721
Tssr52722 5 114690974 to 114690999 25 - TSS region transcription start site region 52722
Tssr52723 5 114691016 to 114691027 11 - TSS region transcription start site region 52723
Gm34931 5 114696983 to 114707819 10836 - lncRNA gene predicted gene, 34931
Cpgi16331 5 114697032 to 114697287 255 CpG island CpG island 16331
Cpgi16332 5 114707447 to 114708178 731 CpG island CpG island 16332
Tchp 5 114707765 to 114722327 14562 + protein coding gene trichoplein, keratin filament binding
Tssr48096 5 114707777 to 114707866 89 + TSS region transcription start site region 48096
Tssr1605 5 114707916 to 114707928 12 + TSS region transcription start site region 1605
Gm42789 5 114715554 to 114716120 566 - antisense lncRNA gene predicted gene 42789
Cpgi16333 5 114718587 to 114718746 159 CpG island CpG island 16333
Mir7028 5 114719515 to 114719578 63 + miRNA gene microRNA 7028
Git2 5 114727408 to 114773522 46114 - protein coding gene GIT ArfGAP 2
Tssr52724 5 114730354 to 114730378 24 - TSS region transcription start site region 52724
Tssr52725 5 114733286 to 114733314 28 - TSS region transcription start site region 52725
Tssr52726 5 114744831 to 114744832 1 - TSS region transcription start site region 52726
Tssr52727 5 114761945 to 114761975 30 - TSS region transcription start site region 52727
Cpgi16334 5 114772625 to 114773690 1065 CpG island CpG island 16334
Tssr52728 5 114772650 to 114772665 15 - TSS region transcription start site region 52728
Tssr48097 5 114772895 to 114772897 2 + TSS region transcription start site region 48097
Tssr52729 5 114773357 to 114773370 13 - TSS region transcription start site region 52729
Tssr52730 5 114773372 to 114773472 100 - TSS region transcription start site region 52730
Tssr52731 5 114773488 to 114773517 29 - TSS region transcription start site region 52731
4930515G01Rik 5 114773737 to 114774983 1246 - antisense lncRNA gene RIKEN cDNA 4930515G01 gene
Cpgi16335 5 114774294 to 114775757 1463 CpG island CpG island 16335
Ankrd13a 5 114774923 to 114805821 30898 + protein coding gene ankyrin repeat domain 13a
Tssr48098 5 114774939 to 114774957 18 + TSS region transcription start site region 48098
Tssr48099 5 114775942 to 114775952 10 + TSS region transcription start site region 48099
Tssr1606 5 114777721 to 114777741 20 + TSS region transcription start site region 1606
Tssr48100 5 114785747 to 114785761 14 + TSS region transcription start site region 48100
Tssr48101 5 114785781 to 114785791 10 + TSS region transcription start site region 48101